Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 Q -1 2 0 -1 -3 4 1 -2 0 -3 -2 4 -1 -3 -1 0 -1 -3 -2 -2 0 0 0 0 0 50 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0.50 0.01 2 H -2 -1 0 -2 -3 0 -1 -3 7 -3 -2 -1 -2 1 -3 -1 -2 0 5 -3 0 0 0 0 0 0 0 0 61 0 0 0 0 0 0 0 0 0 39 0 0.77 0.05 3 L -2 -3 -4 -4 -2 -3 -3 -4 -3 3 4 -3 2 0 -3 -3 -1 -2 -1 2 0 0 0 0 0 0 0 0 0 39 61 0 0 0 0 0 0 0 0 0 0.44 0.05 4 C -1 -4 -3 -4 10 -3 -4 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -3 -3 -1 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.46 0.09 5 P -1 -2 -2 -2 -3 -2 -1 -3 -3 -3 -3 -1 -3 -4 8 -1 -1 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.15 0.09 6 K -1 1 -1 -2 -3 0 0 -2 -2 0 -1 4 -1 -3 -2 -1 -1 -3 -2 1 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0 0 0 0 0 29 0.36 0.09 7 C -1 -4 -3 -4 10 -3 -4 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -3 -3 -1 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.46 0.09 8 G -1 -2 3 -1 -3 -1 -2 4 -1 -2 -1 -1 3 -2 -3 -1 -1 -3 -2 -2 0 0 28 0 0 0 0 44 0 0 0 0 29 0 0 0 0 0 0 0 0.43 0.09 9 V 0 -2 -2 -2 -1 -2 -2 -2 -3 2 0 -2 0 -2 -2 2 0 -3 -2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 72 0.29 0.09 10 G 0 -3 -1 -2 -3 -2 -2 6 -2 -4 -4 -2 -3 -4 -3 -1 -2 -3 -3 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.18 0.09 11 V -1 0 -1 -2 -2 -1 -1 -3 -2 1 -1 2 0 -2 -2 0 2 -3 -2 3 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 0 29 0 0 44 0.22 0.09 12 L -2 -2 -3 -4 -2 -2 -3 -4 -3 1 4 -2 4 0 -3 -3 -1 -2 -1 1 0 0 0 0 0 0 0 0 0 0 71 0 29 0 0 0 0 0 0 0 0.50 0.09 13 E -1 -1 -1 1 -3 1 5 -3 -1 -1 -2 0 -1 -3 -2 -1 -1 -3 -2 1 0 0 0 0 0 0 77 0 0 0 0 0 0 0 0 0 0 0 0 23 0.53 0.09 14 P -1 -2 -2 -2 -3 -2 -1 -3 -3 -3 -3 -1 -3 -4 8 -1 -1 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2.15 0.09 15 V 0 -3 -3 -4 -1 -3 -3 -4 -4 2 1 -3 0 -1 -3 -2 0 -3 -2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0.49 0.09 16 Y -2 -2 -2 -4 -3 -2 -2 -3 2 -2 -1 -2 -1 3 -3 -2 -2 2 8 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 1.06 0.09 17 N -2 -1 6 3 -3 0 0 -1 0 -4 -4 -1 -3 -4 -2 0 -1 -4 -3 -3 0 0 77 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.79 0.09 18 E 2 -1 0 3 -3 3 3 -1 -1 -3 -3 0 -2 -3 -1 0 -1 -3 -2 -2 29 0 0 28 0 23 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0.42 0.09 19 K -1 1 3 0 -3 1 0 -2 -1 -3 -3 5 -2 -4 -2 0 -1 -4 -2 -3 0 0 28 0 0 0 0 0 0 0 0 72 0 0 0 0 0 0 0 0 0.54 0.09 20 G 0 -3 -1 -2 -3 -2 -2 6 -2 -4 -4 -2 -3 -4 -3 -1 -2 -3 -3 -4 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1.18 0.09 21 E -1 0 -1 1 -4 2 6 -2 0 -4 -3 1 -2 -4 -1 0 -1 -3 -2 -3 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0.87 0.09 22 I -2 -3 -4 -4 -2 -3 -4 -4 -4 5 1 -3 1 0 -3 -3 -1 -3 -2 2 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0.54 0.09 23 K -1 1 0 -1 -3 1 0 -2 -1 -2 -2 5 -1 -3 -1 0 2 -3 -2 -2 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0 0 29 0 0 0 0.46 0.09 24 V -1 -3 -3 -4 -1 -3 -3 -4 -3 2 0 -3 0 3 -3 -2 -1 -2 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 0 0 0 0 72 0.40 0.09 25 F -3 -3 -3 -4 -3 -4 -4 -4 -2 0 0 -4 0 7 -4 -3 -2 1 3 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0.93 0.09 26 R -2 6 -1 -2 -4 1 0 -2 -1 -3 -3 3 -2 -3 -2 -1 -1 -3 -2 -3 0 71 0 0 0 0 0 0 0 0 0 29 0 0 0 0 0 0 0 0 0.74 0.09 27 C -1 -4 -3 -4 10 -3 -4 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -3 -3 -1 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.46 0.09 28 S 0 -1 4 3 -2 0 0 -1 -1 -3 -3 -1 -2 -3 -2 3 0 -4 -3 -3 0 0 29 28 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0 0 0.51 0.09 29 N -2 3 6 1 -3 0 0 -1 0 -4 -3 0 -2 -3 -2 0 -1 -4 -2 -3 0 28 72 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.68 0.09 30 P -1 -1 -1 0 -4 1 4 -3 -1 -3 -3 0 -3 -4 6 -1 -1 -4 -3 -3 0 0 0 0 0 0 56 0 0 0 0 0 0 0 44 0 0 0 0 0 1.01 0.09 31 A 3 -2 0 3 -1 -1 0 -1 -2 -2 -3 -1 -2 -3 -1 2 0 -3 -2 -2 44 0 0 28 0 0 0 0 0 0 0 0 0 0 0 29 0 0 0 0 0.38 0.09 32 C -1 -4 -3 -4 10 -3 -4 -3 -3 -2 -2 -3 -2 -3 -3 -1 -1 -3 -3 -1 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.46 0.09 33 D -1 -2 0 4 -3 -1 0 5 -2 -4 -4 -1 -3 -4 -2 -1 -2 -4 -4 -4 0 0 0 44 0 0 0 56 0 0 0 0 0 0 0 0 0 0 0 0 0.78 0.09 34 Y -2 -2 -1 -3 -3 -1 -2 -3 5 -2 -2 -2 -1 2 -3 -2 -2 1 7 -2 0 0 0 0 0 0 0 0 29 0 0 0 0 0 0 0 0 0 71 0 0.86 0.09 35 E -1 -1 -2 0 -3 0 3 -3 -1 2 0 -1 4 -1 -2 -1 -1 -3 -2 0 0 0 0 0 0 0 44 0 0 28 0 0 29 0 0 0 0 0 0 0 0.28 0.09 36 E -1 0 -1 1 -4 2 6 -2 0 -4 -3 1 -2 -4 -1 0 -1 -3 -2 -3 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0.87 0.09 K Lambda Standard Ungapped 0.1419 0.3196 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1505 0.3155 PSI Gapped 0.0461 0.2670