SILENT_MODE BLOCK_FILE jp_cTfe4XP.concise.blc MAX_NSEQ 456 MAX_INPUT_LEN 458 OUTPUT_FILE jp_cTfe4XP.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 84 445 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 446 84 455 H SPACE SUB_CHARS 1 446 84 455 E SPACE SUB_CHARS 1 446 84 455 - SPACE STRAND 3 449 11 COLOUR_TEXT_REGION 3 449 11 449 51 STRAND 33 449 40 COLOUR_TEXT_REGION 33 449 40 449 51 STRAND 46 449 53 COLOUR_TEXT_REGION 46 449 53 449 51 STRAND 73 449 81 COLOUR_TEXT_REGION 73 449 81 449 51 HELIX 18 449 29 COLOUR_TEXT_REGION 18 449 29 449 50 HELIX 32 449 32 COLOUR_TEXT_REGION 32 449 32 449 50 HELIX 56 449 68 COLOUR_TEXT_REGION 56 449 68 449 50 STRAND 3 454 11 COLOUR_TEXT_REGION 3 454 11 454 51 STRAND 32 454 40 COLOUR_TEXT_REGION 32 454 40 454 51 STRAND 46 454 53 COLOUR_TEXT_REGION 46 454 53 454 51 STRAND 73 454 81 COLOUR_TEXT_REGION 73 454 81 454 51 HELIX 18 454 28 COLOUR_TEXT_REGION 18 454 28 454 50 HELIX 56 454 68 COLOUR_TEXT_REGION 56 454 68 454 50 STRAND 3 455 11 COLOUR_TEXT_REGION 3 455 11 455 51 STRAND 36 455 40 COLOUR_TEXT_REGION 36 455 40 455 51 STRAND 46 455 53 COLOUR_TEXT_REGION 46 455 53 455 51 STRAND 73 455 81 COLOUR_TEXT_REGION 73 455 81 455 51 HELIX 17 455 35 COLOUR_TEXT_REGION 17 455 35 455 50 HELIX 56 455 68 COLOUR_TEXT_REGION 56 455 68 455 50