QUERY           : MCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPILTAYPTFA : QUERY 
UniRef90_A2DI90 : VMISKCDPEIQQQFRRFTVSIWDELIEASGGTFTLDDFIFLAARRFRISKQSLKNATQLIRVIFLCADTTQVTLSDFTKFMAKFGPEETLMEKVGGMLSSSNHHGNWLTTDPSGLSNP----DGLYGYFDNTEQNCIIFVYQNIFTKVWNRVNVSSDGKYLVDQNDNEYDSWEQFFQINPMKIQEPSL- : UniRef90_A2DI90
UniRef90_A2FY83 : LKIGHVSAQEDLNFQEIVKSDFLEITQ-NEIDMPAEMFIKNAANYFKQPEQTLENAIDVITPILRPQE-NIVTYDDLFRFLAMFGPKNTVMIKIVSLLRSNNEDTSWLYLDP-AQKPLD---KDFTGTFDKYLPNCLVLKFKDGVIRVFNHPLIDAFGTYVVDENNHQFASWEEFFQS----------- : UniRef90_A2FY83
UniRef90_A2E3Z9 : ITIGALDQTNKNEILSNAINIWQQIVEVIGIDVRSEFFILKLAKRYNLHGQSFENSLSVIKSILAPTNAPLITFLDFYKFYLAFGPEPTIMIKIHSLLEVAVNDKPWLYFGPDEIKKVSENF----AYFDENEPNCLVIVWNGMTHKGYNLPNVSSDSSYVVAEAG-TFKSWTDYIQSLHII------- : UniRef90_A2E3Z9
UniRef90_A2EAY0 : -------------------------------------------------------ARKMLTYVLTHKNTYCITIPEFCTFFARFGPDDSVLEKIHQLLCCSKAYNDW--FKPVEQ--TFDLHKPITGCYSNTFANCFIIKRSQGITHVYNQPFFQGPVGFLFDESDKNFNTWHAVFEMMSCQQIQ---- : UniRef90_A2EAY0
UniRef90_A2FK14 : -----------------------------------------------------------IQQVLVGKTPNVVTIFDFAVFLARFGPFDNVPYKIMQYILHIIQPDYFMFTAP-----------SLINYFSSTFHNCFSFKSQTGEYHCYNLPLISSSAAYLVDEDGVYYKSWEKMVEANHFLTQ----- : UniRef90_A2FK14
UniRef90_A2FZT1 : ------TENEIVAFKRNVITTWEKIIKPNHV-----FAVSKKELTDSFGGQAFCNDPYALQEALTTKVTAVIDINDFAIFMARFDPFENIIFKL--------DKFQQLIPDLRVKMT---QIGSISSFFAKTYHNCFSFQMSGGEYHCYNLPHVGSTANYLQNEDGERFQSWTMALQSTSILQSQTGF- : UniRef90_A2FZT1

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181------ :
OrigSeq         : MCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPILTAYPTFA : OrigSeq

Jnet            : -------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH------HHHHHHHHHHHH------EE-HHHHHHHHHH------HHHHHHHHHHHH----------------------------------EEEEEE---EEEEEE---------EEEE------HHHHHHHHH--HHH------ : Jnet
jhmm            : -------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----------HHHHHHHHH------EE-HHHHHHHHHH------HHHHHHHHHHHH----------------------------------EEEEEE---EEEEEE---------EEEE------HHHHHHHHH--HHH------ : jhmm
jpssm           : -------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-----HHHHHHHHHHHHH------EEEHHHHHHHHHH------HHHHHHHHHHHH----------------------------------EEEEEE---EEEEE----------EEEE------HHHHHHHHH---HH------ : jpssm

Lupas 14        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B--B-------B--BB--BB--BB----B-B-BBBBB--BB--B------B-BBB-BB--BBBB----BBBB-BBB-BBB-BBB--BBB-BBBBBBBBB-----BBBBBB-----B------BBBBBB-BB-BBBBBBB--B---BBBBBBB-B-B-BBBB-----B-BB--BB-B--BB------- : Jnet_25
Jnet_5          : -------------B-------B--B------------BB--B-------------B--BB--BB------------BB-BBB-------B---B--BB---------B----------------B-B-B------BBBB--------B-----B---B--B----------B---B------------- : Jnet_5
Jnet_0          : -----------------------------------------------------------B--B-------------B----B-----------B--------------------------------B--------B----------------------------------------------------- : Jnet_0
Jnet Rel        : 888886278999999999999999861588861288999999987016886233499999887437888523067899998752788746888888877415787632566654566677777642245677774589985585589851677777761576447887427899987503221368899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.