SILENT_MODE
BLOCK_FILE jp_HxWvVXX.concise.blc
MAX_NSEQ 161
MAX_INPUT_LEN 163
OUTPUT_FILE jp_HxWvVXX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 100 150   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 151 100 160 H SPACE
SUB_CHARS 1 151 100 160 E SPACE
SUB_CHARS 1 151 100 160 - SPACE
STRAND 64 154 67
COLOUR_TEXT_REGION 64 154 67 154 51
HELIX 5 154 13
COLOUR_TEXT_REGION 5 154 13 154 50
HELIX 21 154 27
COLOUR_TEXT_REGION 21 154 27 154 50
HELIX 45 154 53
COLOUR_TEXT_REGION 45 154 53 154 50
HELIX 76 154 85
COLOUR_TEXT_REGION 76 154 85 154 50
HELIX 93 154 98
COLOUR_TEXT_REGION 93 154 98 154 50
STRAND 66 159 67
COLOUR_TEXT_REGION 66 159 67 159 51
HELIX 5 159 13
COLOUR_TEXT_REGION 5 159 13 159 50
HELIX 21 159 27
COLOUR_TEXT_REGION 21 159 27 159 50
HELIX 44 159 54
COLOUR_TEXT_REGION 44 159 54 159 50
HELIX 58 159 59
COLOUR_TEXT_REGION 58 159 59 159 50
HELIX 76 159 87
COLOUR_TEXT_REGION 76 159 87 159 50
HELIX 94 159 98
COLOUR_TEXT_REGION 94 159 98 159 50
STRAND 63 160 68
COLOUR_TEXT_REGION 63 160 68 160 51
HELIX 7 160 14
COLOUR_TEXT_REGION 7 160 14 160 50
HELIX 22 160 26
COLOUR_TEXT_REGION 22 160 26 160 50
HELIX 75 160 84
COLOUR_TEXT_REGION 75 160 84 160 50
HELIX 91 160 98
COLOUR_TEXT_REGION 91 160 98 160 50