SILENT_MODE BLOCK_FILE jp_2JrJHnt.concise.blc MAX_NSEQ 348 MAX_INPUT_LEN 350 OUTPUT_FILE jp_2JrJHnt.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 167 337 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 338 167 347 H SPACE SUB_CHARS 1 338 167 347 E SPACE SUB_CHARS 1 338 167 347 - SPACE STRAND 14 341 19 COLOUR_TEXT_REGION 14 341 19 341 51 STRAND 106 341 111 COLOUR_TEXT_REGION 106 341 111 341 51 STRAND 120 341 124 COLOUR_TEXT_REGION 120 341 124 341 51 STRAND 131 341 132 COLOUR_TEXT_REGION 131 341 132 341 51 HELIX 3 341 7 COLOUR_TEXT_REGION 3 341 7 341 50 HELIX 23 341 24 COLOUR_TEXT_REGION 23 341 24 341 50 HELIX 40 341 48 COLOUR_TEXT_REGION 40 341 48 341 50 HELIX 58 341 74 COLOUR_TEXT_REGION 58 341 74 341 50 HELIX 79 341 90 COLOUR_TEXT_REGION 79 341 90 341 50 HELIX 151 341 159 COLOUR_TEXT_REGION 151 341 159 341 50 STRAND 14 346 19 COLOUR_TEXT_REGION 14 346 19 346 51 STRAND 106 346 111 COLOUR_TEXT_REGION 106 346 111 346 51 STRAND 118 346 124 COLOUR_TEXT_REGION 118 346 124 346 51 STRAND 131 346 132 COLOUR_TEXT_REGION 131 346 132 346 51 HELIX 3 346 8 COLOUR_TEXT_REGION 3 346 8 346 50 HELIX 23 346 24 COLOUR_TEXT_REGION 23 346 24 346 50 HELIX 40 346 47 COLOUR_TEXT_REGION 40 346 47 346 50 HELIX 58 346 75 COLOUR_TEXT_REGION 58 346 75 346 50 HELIX 79 346 91 COLOUR_TEXT_REGION 79 346 91 346 50 HELIX 151 346 158 COLOUR_TEXT_REGION 151 346 158 346 50 STRAND 14 347 18 COLOUR_TEXT_REGION 14 347 18 347 51 STRAND 93 347 97 COLOUR_TEXT_REGION 93 347 97 347 51 STRAND 107 347 111 COLOUR_TEXT_REGION 107 347 111 347 51 STRAND 120 347 125 COLOUR_TEXT_REGION 120 347 125 347 51 HELIX 4 347 7 COLOUR_TEXT_REGION 4 347 7 347 50 HELIX 23 347 25 COLOUR_TEXT_REGION 23 347 25 347 50 HELIX 40 347 48 COLOUR_TEXT_REGION 40 347 48 347 50 HELIX 61 347 72 COLOUR_TEXT_REGION 61 347 72 347 50 HELIX 79 347 90 COLOUR_TEXT_REGION 79 347 90 347 50 HELIX 151 347 159 COLOUR_TEXT_REGION 151 347 159 347 50