SILENT_MODE
BLOCK_FILE jp_jOKQfQp.concise.blc
MAX_NSEQ 511
MAX_INPUT_LEN 513
OUTPUT_FILE jp_jOKQfQp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 61 500   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 501 61 510 H SPACE
SUB_CHARS 1 501 61 510 E SPACE
SUB_CHARS 1 501 61 510 - SPACE
STRAND 4 504 8
COLOUR_TEXT_REGION 4 504 8 504 51
STRAND 11 504 11
COLOUR_TEXT_REGION 11 504 11 504 51
STRAND 28 504 32
COLOUR_TEXT_REGION 28 504 32 504 51
STRAND 37 504 42
COLOUR_TEXT_REGION 37 504 42 504 51
STRAND 54 504 59
COLOUR_TEXT_REGION 54 504 59 504 51
HELIX 15 504 24
COLOUR_TEXT_REGION 15 504 24 504 50
STRAND 4 509 8
COLOUR_TEXT_REGION 4 509 8 509 51
STRAND 28 509 32
COLOUR_TEXT_REGION 28 509 32 509 51
STRAND 37 509 42
COLOUR_TEXT_REGION 37 509 42 509 51
STRAND 49 509 49
COLOUR_TEXT_REGION 49 509 49 509 51
STRAND 54 509 59
COLOUR_TEXT_REGION 54 509 59 509 51
HELIX 15 509 24
COLOUR_TEXT_REGION 15 509 24 509 50
STRAND 5 510 7
COLOUR_TEXT_REGION 5 510 7 510 51
STRAND 10 510 11
COLOUR_TEXT_REGION 10 510 11 510 51
STRAND 29 510 33
COLOUR_TEXT_REGION 29 510 33 510 51
STRAND 37 510 43
COLOUR_TEXT_REGION 37 510 43 510 51
STRAND 54 510 59
COLOUR_TEXT_REGION 54 510 59 510 51
HELIX 15 510 24
COLOUR_TEXT_REGION 15 510 24 510 50