SILENT_MODE
BLOCK_FILE jp_ymClwl6.concise.blc
MAX_NSEQ 370
MAX_INPUT_LEN 372
OUTPUT_FILE jp_ymClwl6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 95 359   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 360 95 369 H SPACE
SUB_CHARS 1 360 95 369 E SPACE
SUB_CHARS 1 360 95 369 - SPACE
STRAND 5 363 14
COLOUR_TEXT_REGION 5 363 14 363 51
STRAND 39 363 44
COLOUR_TEXT_REGION 39 363 44 363 51
STRAND 51 363 58
COLOUR_TEXT_REGION 51 363 58 363 51
STRAND 62 363 68
COLOUR_TEXT_REGION 62 363 68 363 51
HELIX 19 363 32
COLOUR_TEXT_REGION 19 363 32 363 50
HELIX 76 363 92
COLOUR_TEXT_REGION 76 363 92 363 50
STRAND 5 368 14
COLOUR_TEXT_REGION 5 368 14 368 51
STRAND 39 368 43
COLOUR_TEXT_REGION 39 368 43 368 51
STRAND 51 368 58
COLOUR_TEXT_REGION 51 368 58 368 51
STRAND 62 368 67
COLOUR_TEXT_REGION 62 368 67 368 51
HELIX 19 368 32
COLOUR_TEXT_REGION 19 368 32 368 50
HELIX 76 368 92
COLOUR_TEXT_REGION 76 368 92 368 50
STRAND 5 369 15
COLOUR_TEXT_REGION 5 369 15 369 51
STRAND 39 369 44
COLOUR_TEXT_REGION 39 369 44 369 51
STRAND 51 369 58
COLOUR_TEXT_REGION 51 369 58 369 51
STRAND 62 369 68
COLOUR_TEXT_REGION 62 369 68 369 51
HELIX 22 369 32
COLOUR_TEXT_REGION 22 369 32 369 50
HELIX 76 369 92
COLOUR_TEXT_REGION 76 369 92 369 50