SILENT_MODE
BLOCK_FILE jp_JqDBU_R.concise.blc
MAX_NSEQ 150
MAX_INPUT_LEN 152
OUTPUT_FILE jp_JqDBU_R.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 102 139   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 140 102 149 H SPACE
SUB_CHARS 1 140 102 149 E SPACE
SUB_CHARS 1 140 102 149 - SPACE
STRAND 6 143 14
COLOUR_TEXT_REGION 6 143 14 143 51
STRAND 19 143 26
COLOUR_TEXT_REGION 19 143 26 143 51
STRAND 32 143 37
COLOUR_TEXT_REGION 32 143 37 143 51
STRAND 41 143 43
COLOUR_TEXT_REGION 41 143 43 143 51
STRAND 58 143 63
COLOUR_TEXT_REGION 58 143 63 143 51
HELIX 49 143 53
COLOUR_TEXT_REGION 49 143 53 143 50
HELIX 68 143 73
COLOUR_TEXT_REGION 68 143 73 143 50
HELIX 76 143 85
COLOUR_TEXT_REGION 76 143 85 143 50
HELIX 94 143 100
COLOUR_TEXT_REGION 94 143 100 143 50
STRAND 6 148 14
COLOUR_TEXT_REGION 6 148 14 148 51
STRAND 19 148 26
COLOUR_TEXT_REGION 19 148 26 148 51
STRAND 32 148 37
COLOUR_TEXT_REGION 32 148 37 148 51
STRAND 41 148 43
COLOUR_TEXT_REGION 41 148 43 148 51
STRAND 58 148 63
COLOUR_TEXT_REGION 58 148 63 148 51
HELIX 49 148 53
COLOUR_TEXT_REGION 49 148 53 148 50
HELIX 68 148 72
COLOUR_TEXT_REGION 68 148 72 148 50
HELIX 76 148 85
COLOUR_TEXT_REGION 76 148 85 148 50
HELIX 94 148 100
COLOUR_TEXT_REGION 94 148 100 148 50
STRAND 6 149 15
COLOUR_TEXT_REGION 6 149 15 149 51
STRAND 19 149 26
COLOUR_TEXT_REGION 19 149 26 149 51
STRAND 32 149 36
COLOUR_TEXT_REGION 32 149 36 149 51
STRAND 41 149 43
COLOUR_TEXT_REGION 41 149 43 149 51
STRAND 58 149 64
COLOUR_TEXT_REGION 58 149 64 149 51
HELIX 49 149 54
COLOUR_TEXT_REGION 49 149 54 149 50
HELIX 68 149 86
COLOUR_TEXT_REGION 68 149 86 149 50
HELIX 94 149 100
COLOUR_TEXT_REGION 94 149 100 149 50