SILENT_MODE BLOCK_FILE jp_JqDBU_R.concise.blc MAX_NSEQ 150 MAX_INPUT_LEN 152 OUTPUT_FILE jp_JqDBU_R.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 102 139 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 140 102 149 H SPACE SUB_CHARS 1 140 102 149 E SPACE SUB_CHARS 1 140 102 149 - SPACE STRAND 6 143 14 COLOUR_TEXT_REGION 6 143 14 143 51 STRAND 19 143 26 COLOUR_TEXT_REGION 19 143 26 143 51 STRAND 32 143 37 COLOUR_TEXT_REGION 32 143 37 143 51 STRAND 41 143 43 COLOUR_TEXT_REGION 41 143 43 143 51 STRAND 58 143 63 COLOUR_TEXT_REGION 58 143 63 143 51 HELIX 49 143 53 COLOUR_TEXT_REGION 49 143 53 143 50 HELIX 68 143 73 COLOUR_TEXT_REGION 68 143 73 143 50 HELIX 76 143 85 COLOUR_TEXT_REGION 76 143 85 143 50 HELIX 94 143 100 COLOUR_TEXT_REGION 94 143 100 143 50 STRAND 6 148 14 COLOUR_TEXT_REGION 6 148 14 148 51 STRAND 19 148 26 COLOUR_TEXT_REGION 19 148 26 148 51 STRAND 32 148 37 COLOUR_TEXT_REGION 32 148 37 148 51 STRAND 41 148 43 COLOUR_TEXT_REGION 41 148 43 148 51 STRAND 58 148 63 COLOUR_TEXT_REGION 58 148 63 148 51 HELIX 49 148 53 COLOUR_TEXT_REGION 49 148 53 148 50 HELIX 68 148 72 COLOUR_TEXT_REGION 68 148 72 148 50 HELIX 76 148 85 COLOUR_TEXT_REGION 76 148 85 148 50 HELIX 94 148 100 COLOUR_TEXT_REGION 94 148 100 148 50 STRAND 6 149 15 COLOUR_TEXT_REGION 6 149 15 149 51 STRAND 19 149 26 COLOUR_TEXT_REGION 19 149 26 149 51 STRAND 32 149 36 COLOUR_TEXT_REGION 32 149 36 149 51 STRAND 41 149 43 COLOUR_TEXT_REGION 41 149 43 149 51 STRAND 58 149 64 COLOUR_TEXT_REGION 58 149 64 149 51 HELIX 49 149 54 COLOUR_TEXT_REGION 49 149 54 149 50 HELIX 68 149 86 COLOUR_TEXT_REGION 68 149 86 149 50 HELIX 94 149 100 COLOUR_TEXT_REGION 94 149 100 149 50