SILENT_MODE BLOCK_FILE jp_SFVtrP7.concise.blc MAX_NSEQ 887 MAX_INPUT_LEN 889 OUTPUT_FILE jp_SFVtrP7.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 243 876 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 877 243 886 H SPACE SUB_CHARS 1 877 243 886 E SPACE SUB_CHARS 1 877 243 886 - SPACE STRAND 4 880 10 COLOUR_TEXT_REGION 4 880 10 880 51 STRAND 34 880 38 COLOUR_TEXT_REGION 34 880 38 880 51 STRAND 59 880 62 COLOUR_TEXT_REGION 59 880 62 880 51 STRAND 86 880 88 COLOUR_TEXT_REGION 86 880 88 880 51 STRAND 110 880 112 COLOUR_TEXT_REGION 110 880 112 880 51 STRAND 133 880 136 COLOUR_TEXT_REGION 133 880 136 880 51 STRAND 161 880 163 COLOUR_TEXT_REGION 161 880 163 880 51 STRAND 208 880 209 COLOUR_TEXT_REGION 208 880 209 880 51 STRAND 213 880 216 COLOUR_TEXT_REGION 213 880 216 880 51 STRAND 224 880 226 COLOUR_TEXT_REGION 224 880 226 880 51 HELIX 17 880 30 COLOUR_TEXT_REGION 17 880 30 880 50 HELIX 42 880 54 COLOUR_TEXT_REGION 42 880 54 880 50 HELIX 70 880 79 COLOUR_TEXT_REGION 70 880 79 880 50 HELIX 96 880 104 COLOUR_TEXT_REGION 96 880 104 880 50 HELIX 119 880 128 COLOUR_TEXT_REGION 119 880 128 880 50 HELIX 144 880 156 COLOUR_TEXT_REGION 144 880 156 880 50 HELIX 169 880 181 COLOUR_TEXT_REGION 169 880 181 880 50 HELIX 228 880 235 COLOUR_TEXT_REGION 228 880 235 880 50 STRAND 4 885 10 COLOUR_TEXT_REGION 4 885 10 885 51 STRAND 34 885 38 COLOUR_TEXT_REGION 34 885 38 885 51 STRAND 59 885 62 COLOUR_TEXT_REGION 59 885 62 885 51 STRAND 86 885 88 COLOUR_TEXT_REGION 86 885 88 885 51 STRAND 110 885 112 COLOUR_TEXT_REGION 110 885 112 885 51 STRAND 133 885 135 COLOUR_TEXT_REGION 133 885 135 885 51 STRAND 161 885 163 COLOUR_TEXT_REGION 161 885 163 885 51 STRAND 208 885 209 COLOUR_TEXT_REGION 208 885 209 885 51 STRAND 213 885 216 COLOUR_TEXT_REGION 213 885 216 885 51 STRAND 224 885 226 COLOUR_TEXT_REGION 224 885 226 885 51 HELIX 17 885 30 COLOUR_TEXT_REGION 17 885 30 885 50 HELIX 42 885 54 COLOUR_TEXT_REGION 42 885 54 885 50 HELIX 70 885 79 COLOUR_TEXT_REGION 70 885 79 885 50 HELIX 96 885 104 COLOUR_TEXT_REGION 96 885 104 885 50 HELIX 119 885 128 COLOUR_TEXT_REGION 119 885 128 885 50 HELIX 144 885 156 COLOUR_TEXT_REGION 144 885 156 885 50 HELIX 169 885 180 COLOUR_TEXT_REGION 169 885 180 885 50 HELIX 228 885 234 COLOUR_TEXT_REGION 228 885 234 885 50 STRAND 4 886 11 COLOUR_TEXT_REGION 4 886 11 886 51 STRAND 34 886 38 COLOUR_TEXT_REGION 34 886 38 886 51 STRAND 59 886 61 COLOUR_TEXT_REGION 59 886 61 886 51 STRAND 85 886 86 COLOUR_TEXT_REGION 85 886 86 886 51 STRAND 111 886 112 COLOUR_TEXT_REGION 111 886 112 886 51 STRAND 132 886 136 COLOUR_TEXT_REGION 132 886 136 886 51 STRAND 162 886 163 COLOUR_TEXT_REGION 162 886 163 886 51 STRAND 189 886 189 COLOUR_TEXT_REGION 189 886 189 886 51 STRAND 207 886 209 COLOUR_TEXT_REGION 207 886 209 886 51 STRAND 213 886 215 COLOUR_TEXT_REGION 213 886 215 886 51 STRAND 224 886 224 COLOUR_TEXT_REGION 224 886 224 886 51 HELIX 17 886 29 COLOUR_TEXT_REGION 17 886 29 886 50 HELIX 42 886 54 COLOUR_TEXT_REGION 42 886 54 886 50 HELIX 70 886 79 COLOUR_TEXT_REGION 70 886 79 886 50 HELIX 87 886 92 COLOUR_TEXT_REGION 87 886 92 886 50 HELIX 97 886 103 COLOUR_TEXT_REGION 97 886 103 886 50 HELIX 122 886 128 COLOUR_TEXT_REGION 122 886 128 886 50 HELIX 144 886 157 COLOUR_TEXT_REGION 144 886 157 886 50 HELIX 172 886 182 COLOUR_TEXT_REGION 172 886 182 886 50 HELIX 228 886 236 COLOUR_TEXT_REGION 228 886 236 886 50