SILENT_MODE
BLOCK_FILE jp_k3yERMB.concise.blc
MAX_NSEQ 156
MAX_INPUT_LEN 158
OUTPUT_FILE jp_k3yERMB.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 78 145   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 146 78 155 H SPACE
SUB_CHARS 1 146 78 155 E SPACE
SUB_CHARS 1 146 78 155 - SPACE
STRAND 4 149 10
COLOUR_TEXT_REGION 4 149 10 149 51
STRAND 17 149 21
COLOUR_TEXT_REGION 17 149 21 149 51
STRAND 30 149 36
COLOUR_TEXT_REGION 30 149 36 149 51
STRAND 56 149 62
COLOUR_TEXT_REGION 56 149 62 149 51
STRAND 67 149 73
COLOUR_TEXT_REGION 67 149 73 149 51
HELIX 43 149 51
COLOUR_TEXT_REGION 43 149 51 149 50
STRAND 4 154 11
COLOUR_TEXT_REGION 4 154 11 154 51
STRAND 17 154 21
COLOUR_TEXT_REGION 17 154 21 154 51
STRAND 30 154 36
COLOUR_TEXT_REGION 30 154 36 154 51
STRAND 56 154 62
COLOUR_TEXT_REGION 56 154 62 154 51
STRAND 67 154 74
COLOUR_TEXT_REGION 67 154 74 154 51
HELIX 43 154 51
COLOUR_TEXT_REGION 43 154 51 154 50
STRAND 5 155 10
COLOUR_TEXT_REGION 5 155 10 155 51
STRAND 17 155 21
COLOUR_TEXT_REGION 17 155 21 155 51
STRAND 30 155 35
COLOUR_TEXT_REGION 30 155 35 155 51
STRAND 56 155 62
COLOUR_TEXT_REGION 56 155 62 155 51
STRAND 67 155 73
COLOUR_TEXT_REGION 67 155 73 155 51
HELIX 43 155 52
COLOUR_TEXT_REGION 43 155 52 155 50