SILENT_MODE BLOCK_FILE jp_1O90lsc.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_1O90lsc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 75 34 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 35 75 44 H SPACE SUB_CHARS 1 35 75 44 E SPACE SUB_CHARS 1 35 75 44 - SPACE STRAND 10 38 14 COLOUR_TEXT_REGION 10 38 14 38 51 STRAND 18 38 22 COLOUR_TEXT_REGION 18 38 22 38 51 STRAND 28 38 29 COLOUR_TEXT_REGION 28 38 29 38 51 STRAND 39 38 41 COLOUR_TEXT_REGION 39 38 41 38 51 STRAND 58 38 58 COLOUR_TEXT_REGION 58 38 58 38 51 HELIX 26 38 27 COLOUR_TEXT_REGION 26 38 27 38 50 HELIX 42 38 52 COLOUR_TEXT_REGION 42 38 52 38 50 HELIX 55 38 57 COLOUR_TEXT_REGION 55 38 57 38 50 HELIX 59 38 60 COLOUR_TEXT_REGION 59 38 60 38 50 HELIX 63 38 73 COLOUR_TEXT_REGION 63 38 73 38 50 STRAND 11 43 15 COLOUR_TEXT_REGION 11 43 15 43 51 STRAND 18 43 22 COLOUR_TEXT_REGION 18 43 22 43 51 STRAND 39 43 41 COLOUR_TEXT_REGION 39 43 41 43 51 STRAND 56 43 60 COLOUR_TEXT_REGION 56 43 60 43 51 HELIX 24 43 28 COLOUR_TEXT_REGION 24 43 28 43 50 HELIX 42 43 52 COLOUR_TEXT_REGION 42 43 52 43 50 HELIX 63 43 73 COLOUR_TEXT_REGION 63 43 73 43 50 STRAND 8 44 14 COLOUR_TEXT_REGION 8 44 14 44 51 STRAND 18 44 22 COLOUR_TEXT_REGION 18 44 22 44 51 STRAND 26 44 30 COLOUR_TEXT_REGION 26 44 30 44 51 STRAND 32 44 32 COLOUR_TEXT_REGION 32 44 32 44 51 STRAND 39 44 41 COLOUR_TEXT_REGION 39 44 41 44 51 HELIX 42 44 61 COLOUR_TEXT_REGION 42 44 61 44 50 HELIX 63 44 73 COLOUR_TEXT_REGION 63 44 73 44 50