QUERY : GEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVER : QUERY
UniRef90_F2KNL1 : GGQEEKLVTFRGTFTGDRVITDRKEIFEEHFYGSLGWGVVTLSLIEALYLVDAGFLEVYARGREELWKASLSIE- : UniRef90_F2KNL1
UniRef90_N0BDW4 : GKTKGIDKKIEGYFAGDRVLTDDLEIFSRFFFGSEKDGMVALSILESLYMIEEGILT-LNLSLNEFRAKAEAIE- : UniRef90_N0BDW4
UniRef90_D3RY25 : GRHEEKLREVRGFLCGERVIVEDVEIFRKYFYGTEKSGYVALSLVESLYLLEKGFLIMDEEEAEELRSAVDE--- : UniRef90_D3RY25
UniRef90_O29362 : GEQKEELPEIAGILSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGK-------------------- : UniRef90_O29362
UniRef90_F6BCQ4 : -------KQIVGILSDDRVVVFDKNGISRLYYGEKNDDFLSLSLIEALYLTSLGWLVVKDLSFEELYEYARNIE- : UniRef90_F6BCQ4
UniRef90_D2REQ8 : GRHEEEEFNVKGVLVENRIFTDGF-LHRTYFYGSMKGDMTILSILEGAYLVEKGCLEVYKAG------------- : UniRef90_D2REQ8
UniRef90_Q58819 : -------KKITGLLDGDRVIVFDKNGISKLHYGNVEGNFLSLSLVEALYLINLGWLEVKPLSFEELYEYARNVE- : UniRef90_Q58819
UniRef90_N6V0L5 : ------MRKILGMLDKDRVVIFDKNGINKLLYGNFEGNFLSLSLVEALYLVNLGWLEVKDLSFEELYNYAKNIE- : UniRef90_N6V0L5
UniRef90_UPI0003654C72 : -------KQIIGKLSDERVLVFDRDGISKLHYGELNDNFLSLSLVEALYVVSKNWLRVKDLSFEELYDYAHQIE- : UniRef90_UPI0003654C72
UniRef90_D5VSF7 : --------KIVGYLDKDRVVIFNKNLTSRH-YGKLEKNFLSLSLIEALYLVEMGWITVKKLSFEELYLYAKEIE- : UniRef90_D5VSF7
UniRef90_A6UVS0 : -------KPIIAKLSEDRALIFNKDGISRLNYGELNDNFLSISIVETMYLLSKNWIKVKSLSFEELYDYAHNID- : UniRef90_A6UVS0
UniRef90_Q6LY59 : -------KTIPAKLSDERIVIYDKDGISRLRYGELHENFLSLSFVEGLYLVSKNWISLRDLSFEELFDVAQNIDR : UniRef90_Q6LY59
UniRef90_M9SGR3 : --------KAVGKLVGDRIFVFDKDLHDEAFYGKDMQGVLQLSLIEGCYLIGKGELEVLNR-------------- : UniRef90_M9SGR3
UniRef90_O58033 : -------KPIEFYLSGDRVYSTREKAINQLYYGELKGDKLFLSLIEAAYLTEKGWIKVVDKDKE----------- : UniRef90_O58033
UniRef90_F4HMH2 : -------KVIEFYLSGDRVYSTREKAINQLYYGELKGNKLFLSLIEAAYLTERGWIQVLDGNRELSFEDIVNIGR : UniRef90_F4HMH2
UniRef90_M4YIW8 : ----------VGKLVGDIIFVFDKSLYEEAFFGKQSGGILQLSLIEGCYLIHTGELRVFDRKGNEMDEAAL---- : UniRef90_M4YIW8
UniRef90_A0B716 : GRTESAEPGGQATLLDDRVVLWDPKASERLFYGKMIGERLQLSLVETAYLLERGMIQLVDRSLDELMRRASEIE- : UniRef90_A0B716
UniRef90_R9TC22 : -------------LMEDRVLVFDQKSVEKLYYGKQTGAVLQLSLIEAAHLMEKGWLEV----------------- : UniRef90_R9TC22
UniRef90_U1QSI5 : GETDHDLPRVAGRLLSDRVLVSDTALYERAFYGQQVDGLVQLSLVEAASLADRDLLALEDVGGAALRERGRAVE- : UniRef90_U1QSI5
UniRef90_Q8PZI1 : GEMPEPFPAVKATFLEDRVIAWDAELYSRGFYGKMLDERLQLSLVESLYLFSRGVIVVRDRSFDEFVEKASEIE- : UniRef90_Q8PZI1
UniRef90_D7DTM4 : -------------LVDDRILVHDRNAISRLRYGELHDNFLSLSLVEGLYLTYKEWIVVTKIDFEELFELVNEI-- : UniRef90_D7DTM4
UniRef90_W0JZB8 : GETEFDPPTVEGVLLETRVLVWDAELHDRGFYGQPLGDALQLSLLEAAYLAASGALVLDGAGVEQIVERGRAVE- : UniRef90_W0JZB8
UniRef90_G7WNB5 : GEMEVEAPGGTATLLEDRVMLWDPELHEGGFYGKPVGGRLQLSLVESAYLLEKGVLRIVDRSGEEFSRRSRLVE- : UniRef90_G7WNB5
UniRef90_G0QGE6 : ----------EGVFVDTRVLVRDKDVYEEHYYGKFNDEVLELSLVEAYHLMDRDILKVQNEGEQLSQDEALEV-- : UniRef90_G0QGE6
UniRef90_H3ZM41 : --------EFKFYLSGDRVFSTMESAINKLYYGEVVNGKLFLSLIEAAYLLDKGWIKVFDGEKELRVQELFEIGR : UniRef90_H3ZM41
UniRef90_D1JH31 : ---KEERRKVKASLFGDRVVLWDADLYRTYFYGNLKEKRLLLSFLEAAYLIRKGMLEMEVAPFERFIEYASTIE- : UniRef90_D1JH31
UniRef90_Q5UYF6 : GTSDAAVPATAGELLGERVVCWEAELYEQAFYGQQDDGAVQLSLVEAAYLTQEGMLTV-EGGADAVVERGREVE- : UniRef90_Q5UYF6
UniRef90_B0R7C0 : --------DVPGVLLDDRVLVWEQRLHNAGFYGQPLGDALQLSLVEAAYLIDAGVLRLTDATIDDVRARGR---- : UniRef90_B0R7C0
UniRef90_UPI00029A50AB : ---------IVFYLSGNRVFSTDKNLHNNRRYGKLVNGKVFLSLLEAAYLIERGKIEVRDLTLEEVMKLGRE--- : UniRef90_UPI00029A50AB
UniRef90_G0HMC9 : -------------LSGDRVFSEREKAINQFYFGEVVNGKLFLSLIEAAYLMEKGKIRVFDGERE----------- : UniRef90_G0HMC9
: 1---------11--------21--------31--------41--------51--------61--------71--- :
OrigSeq : GEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVER : OrigSeq
Jnet : ---------EEEEE---EEEEE---HHEE---------EEEHHHHHHHHHHH--HHHEHH--HHHHHHHHHHH-- : Jnet
jhmm : ----------EEEEE--EEEEE-HHHHH----------EEEHHHHHHHHHHH---EEEEE--HHHHHHHHHHH-- : jhmm
jpssm : -------EEEEEEE---EEEEE---EEEEE-E------EEEHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-- : jpssm
Lupas 14 : -------------------------------------------------------cccccccccccccc------ : Lupas 14
Lupas 21 : --------------------------------------------------------------------------- : Lupas 21
Lupas 28 : --------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---------B-BBBB--BBBB----BB--BBBB-----BBBBBBBBBBBBB--BBB-B----B--BB--B--B-- : Jnet_25
Jnet_5 : -----------B-B----BB-------------------BBB-BB-BB-------B-B-------B---B----- : Jnet_5
Jnet_0 : -----------------------------------------B-BB--------------------B--------- : Jnet_0
Jnet Rel : 998766430399850855898633010001025788852416889999988712310001334489999885149 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.