SILENT_MODE
BLOCK_FILE jp_C3o7arC.concise.blc
MAX_NSEQ 650
MAX_INPUT_LEN 652
OUTPUT_FILE jp_C3o7arC.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 639   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 640 122 649 H SPACE
SUB_CHARS 1 640 122 649 E SPACE
SUB_CHARS 1 640 122 649 - SPACE
STRAND 27 643 32
COLOUR_TEXT_REGION 27 643 32 643 51
STRAND 36 643 39
COLOUR_TEXT_REGION 36 643 39 643 51
HELIX 8 643 21
COLOUR_TEXT_REGION 8 643 21 643 50
HELIX 51 643 53
COLOUR_TEXT_REGION 51 643 53 643 50
HELIX 73 643 83
COLOUR_TEXT_REGION 73 643 83 643 50
HELIX 93 643 105
COLOUR_TEXT_REGION 93 643 105 643 50
HELIX 109 643 120
COLOUR_TEXT_REGION 109 643 120 643 50
STRAND 27 648 32
COLOUR_TEXT_REGION 27 648 32 648 51
STRAND 36 648 45
COLOUR_TEXT_REGION 36 648 45 648 51
STRAND 66 648 68
COLOUR_TEXT_REGION 66 648 68 648 51
HELIX 8 648 21
COLOUR_TEXT_REGION 8 648 21 648 50
HELIX 51 648 55
COLOUR_TEXT_REGION 51 648 55 648 50
HELIX 74 648 85
COLOUR_TEXT_REGION 74 648 85 648 50
HELIX 96 648 105
COLOUR_TEXT_REGION 96 648 105 648 50
HELIX 109 648 120
COLOUR_TEXT_REGION 109 648 120 648 50
STRAND 27 649 32
COLOUR_TEXT_REGION 27 649 32 649 51
STRAND 35 649 39
COLOUR_TEXT_REGION 35 649 39 649 51
HELIX 9 649 21
COLOUR_TEXT_REGION 9 649 21 649 50
HELIX 71 649 78
COLOUR_TEXT_REGION 71 649 78 649 50
HELIX 93 649 105
COLOUR_TEXT_REGION 93 649 105 649 50
HELIX 109 649 120
COLOUR_TEXT_REGION 109 649 120 649 50