SILENT_MODE BLOCK_FILE jp_09mT561.concise.blc MAX_NSEQ 552 MAX_INPUT_LEN 554 OUTPUT_FILE jp_09mT561.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 82 541 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 542 82 551 H SPACE SUB_CHARS 1 542 82 551 E SPACE SUB_CHARS 1 542 82 551 - SPACE STRAND 5 545 12 COLOUR_TEXT_REGION 5 545 12 545 51 STRAND 18 545 23 COLOUR_TEXT_REGION 18 545 23 545 51 STRAND 26 545 30 COLOUR_TEXT_REGION 26 545 30 545 51 STRAND 46 545 50 COLOUR_TEXT_REGION 46 545 50 545 51 STRAND 74 545 79 COLOUR_TEXT_REGION 74 545 79 545 51 HELIX 60 545 69 COLOUR_TEXT_REGION 60 545 69 545 50 STRAND 5 550 12 COLOUR_TEXT_REGION 5 550 12 550 51 STRAND 18 550 23 COLOUR_TEXT_REGION 18 550 23 550 51 STRAND 26 550 30 COLOUR_TEXT_REGION 26 550 30 550 51 STRAND 45 550 50 COLOUR_TEXT_REGION 45 550 50 550 51 STRAND 74 550 79 COLOUR_TEXT_REGION 74 550 79 550 51 HELIX 60 550 69 COLOUR_TEXT_REGION 60 550 69 550 50 STRAND 6 551 11 COLOUR_TEXT_REGION 6 551 11 551 51 STRAND 17 551 23 COLOUR_TEXT_REGION 17 551 23 551 51 STRAND 26 551 31 COLOUR_TEXT_REGION 26 551 31 551 51 STRAND 46 551 50 COLOUR_TEXT_REGION 46 551 50 551 51 STRAND 53 551 54 COLOUR_TEXT_REGION 53 551 54 551 51 STRAND 73 551 79 COLOUR_TEXT_REGION 73 551 79 551 51 HELIX 60 551 69 COLOUR_TEXT_REGION 60 551 69 551 50