SILENT_MODE BLOCK_FILE jp_SpL238R.concise.blc MAX_NSEQ 677 MAX_INPUT_LEN 679 OUTPUT_FILE jp_SpL238R.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 187 666 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 667 187 676 H SPACE SUB_CHARS 1 667 187 676 E SPACE SUB_CHARS 1 667 187 676 - SPACE STRAND 182 670 183 COLOUR_TEXT_REGION 182 670 183 670 51 HELIX 3 670 12 COLOUR_TEXT_REGION 3 670 12 670 50 HELIX 16 670 24 COLOUR_TEXT_REGION 16 670 24 670 50 HELIX 32 670 41 COLOUR_TEXT_REGION 32 670 41 670 50 HELIX 47 670 54 COLOUR_TEXT_REGION 47 670 54 670 50 HELIX 59 670 72 COLOUR_TEXT_REGION 59 670 72 670 50 HELIX 79 670 89 COLOUR_TEXT_REGION 79 670 89 670 50 HELIX 97 670 113 COLOUR_TEXT_REGION 97 670 113 670 50 HELIX 124 670 134 COLOUR_TEXT_REGION 124 670 134 670 50 HELIX 149 670 156 COLOUR_TEXT_REGION 149 670 156 670 50 HELIX 167 670 179 COLOUR_TEXT_REGION 167 670 179 670 50 STRAND 182 675 184 COLOUR_TEXT_REGION 182 675 184 675 51 HELIX 3 675 12 COLOUR_TEXT_REGION 3 675 12 675 50 HELIX 15 675 24 COLOUR_TEXT_REGION 15 675 24 675 50 HELIX 32 675 41 COLOUR_TEXT_REGION 32 675 41 675 50 HELIX 47 675 54 COLOUR_TEXT_REGION 47 675 54 675 50 HELIX 60 675 71 COLOUR_TEXT_REGION 60 675 71 675 50 HELIX 79 675 89 COLOUR_TEXT_REGION 79 675 89 675 50 HELIX 97 675 113 COLOUR_TEXT_REGION 97 675 113 675 50 HELIX 124 675 135 COLOUR_TEXT_REGION 124 675 135 675 50 HELIX 149 675 156 COLOUR_TEXT_REGION 149 675 156 675 50 HELIX 167 675 179 COLOUR_TEXT_REGION 167 675 179 675 50 STRAND 125 676 133 COLOUR_TEXT_REGION 125 676 133 676 51 STRAND 182 676 183 COLOUR_TEXT_REGION 182 676 183 676 51 HELIX 2 676 12 COLOUR_TEXT_REGION 2 676 12 676 50 HELIX 16 676 24 COLOUR_TEXT_REGION 16 676 24 676 50 HELIX 32 676 41 COLOUR_TEXT_REGION 32 676 41 676 50 HELIX 48 676 54 COLOUR_TEXT_REGION 48 676 54 676 50 HELIX 59 676 72 COLOUR_TEXT_REGION 59 676 72 676 50 HELIX 80 676 88 COLOUR_TEXT_REGION 80 676 88 676 50 HELIX 98 676 113 COLOUR_TEXT_REGION 98 676 113 676 50 HELIX 149 676 155 COLOUR_TEXT_REGION 149 676 155 676 50 HELIX 167 676 179 COLOUR_TEXT_REGION 167 676 179 676 50