SILENT_MODE BLOCK_FILE jp_qqaclsI.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_qqaclsI.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 121 7 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 8 121 17 H SPACE SUB_CHARS 1 8 121 17 E SPACE SUB_CHARS 1 8 121 17 - SPACE STRAND 18 11 20 COLOUR_TEXT_REGION 18 11 20 11 51 STRAND 77 11 77 COLOUR_TEXT_REGION 77 11 77 11 51 STRAND 84 11 96 COLOUR_TEXT_REGION 84 11 96 11 51 HELIX 38 11 48 COLOUR_TEXT_REGION 38 11 48 11 50 HELIX 54 11 61 COLOUR_TEXT_REGION 54 11 61 11 50 HELIX 69 11 76 COLOUR_TEXT_REGION 69 11 76 11 50 HELIX 101 11 118 COLOUR_TEXT_REGION 101 11 118 11 50 STRAND 18 16 20 COLOUR_TEXT_REGION 18 16 20 16 51 STRAND 76 16 77 COLOUR_TEXT_REGION 76 16 77 16 51 STRAND 84 16 96 COLOUR_TEXT_REGION 84 16 96 16 51 HELIX 39 16 48 COLOUR_TEXT_REGION 39 16 48 16 50 HELIX 56 16 61 COLOUR_TEXT_REGION 56 16 61 16 50 HELIX 68 16 75 COLOUR_TEXT_REGION 68 16 75 16 50 HELIX 101 16 118 COLOUR_TEXT_REGION 101 16 118 16 50 STRAND 18 17 20 COLOUR_TEXT_REGION 18 17 20 17 51 STRAND 84 17 96 COLOUR_TEXT_REGION 84 17 96 17 51 HELIX 38 17 47 COLOUR_TEXT_REGION 38 17 47 17 50 HELIX 53 17 61 COLOUR_TEXT_REGION 53 17 61 17 50 HELIX 70 17 78 COLOUR_TEXT_REGION 70 17 78 17 50 HELIX 100 17 119 COLOUR_TEXT_REGION 100 17 119 17 50