QUERY           : HMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA : QUERY 
UniRef90_Q80R12 : ---TPFQLPDESPNRDEWRVHHCETKDYPLGFKESWGFGKVVFKRYYRHDWKETSLHRVIRSWSGDTVNYAASRFFGVNQVGCTYSIRIRGISVTLSGGSGTLQRLIEMAIRIKLSELQLA : UniRef90_Q80R12
UniRef90_P17457 : --TSPFKLPDESPSLHEWRLHHSEEKDNPLGFKESWSFGKVVFKRYLRYDGAETSLHRALGSWERDSVNDAASRFLGLSQIGCTYSIRFRGTRLTLSGGSGTLQRLIEMAIRTKRTMLQ-- : UniRef90_P17457
UniRef90_Q9E348 : ---APFQLPDESPTSDEWRLHHDADTDCPLGFKEFWSVGKAISKRYHRYDWKEASLDRALGSWQGDKVITEASRFLGVDQVSCTYSIRVRGVSITLSGGSRALLRLVSMADRIKRSELQFA : UniRef90_Q9E348

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111------- :
OrigSeq         : HMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA : OrigSeq

Jnet            : -----------------EEE-----------------HHHHHHHHHHH-----HHHHHHHH-------HHHHHHHHE------EEEEEEEEEEEEE----HHHHHHHHHHHHHHHHHH--- : Jnet
jhmm            : -----------------EEE------------------HHHHHHHHHH-------HHHHHH------HHHHHHHHEE------EEEEEEEEEEEEE----HHHHHHHHHHHHHHHHHH--- : jhmm
jpssm           : -----------------EEE-----------------HHHHHHHHHH-----HHHHHHHHH--------HHHHHHHHH-----EEEEEEEEEEEEE---HHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----B-B------B--B-B-------BBBBB--BBBBB-BBB--BB-B----B-B--BB-BB----B--BBBBBBBB-BBBBBBBB-BBBBBBBB-B---BB--BB-BBB-B----B--- : Jnet_25
Jnet_5          : -------------------------------B------B-BBB------------B--B------------B-----B----B---B------B-B------B--BB-------------- : Jnet_5
Jnet_0          : ------------------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 8988777776677776346436777767777664442178998886216875113998874377887110012542034888468999888899860770899999999999999876499 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.