SILENT_MODE BLOCK_FILE jp_YqFXLZp.concise.blc MAX_NSEQ 1012 MAX_INPUT_LEN 1014 OUTPUT_FILE jp_YqFXLZp.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 226 1001 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1002 226 1011 H SPACE SUB_CHARS 1 1002 226 1011 E SPACE SUB_CHARS 1 1002 226 1011 - SPACE STRAND 21 1005 25 COLOUR_TEXT_REGION 21 1005 25 1005 51 STRAND 48 1005 50 COLOUR_TEXT_REGION 48 1005 50 1005 51 STRAND 68 1005 71 COLOUR_TEXT_REGION 68 1005 71 1005 51 STRAND 90 1005 92 COLOUR_TEXT_REGION 90 1005 92 1005 51 STRAND 110 1005 116 COLOUR_TEXT_REGION 110 1005 116 1005 51 STRAND 144 1005 149 COLOUR_TEXT_REGION 144 1005 149 1005 51 STRAND 182 1005 183 COLOUR_TEXT_REGION 182 1005 183 1005 51 HELIX 3 1005 16 COLOUR_TEXT_REGION 3 1005 16 1005 50 HELIX 34 1005 44 COLOUR_TEXT_REGION 34 1005 44 1005 50 HELIX 47 1005 47 COLOUR_TEXT_REGION 47 1005 47 1005 50 HELIX 53 1005 61 COLOUR_TEXT_REGION 53 1005 61 1005 50 HELIX 78 1005 86 COLOUR_TEXT_REGION 78 1005 86 1005 50 HELIX 95 1005 105 COLOUR_TEXT_REGION 95 1005 105 1005 50 HELIX 127 1005 139 COLOUR_TEXT_REGION 127 1005 139 1005 50 HELIX 161 1005 175 COLOUR_TEXT_REGION 161 1005 175 1005 50 HELIX 187 1005 190 COLOUR_TEXT_REGION 187 1005 190 1005 50 HELIX 200 1005 207 COLOUR_TEXT_REGION 200 1005 207 1005 50 STRAND 21 1010 25 COLOUR_TEXT_REGION 21 1010 25 1010 51 STRAND 47 1010 51 COLOUR_TEXT_REGION 47 1010 51 1010 51 STRAND 68 1010 71 COLOUR_TEXT_REGION 68 1010 71 1010 51 STRAND 90 1010 92 COLOUR_TEXT_REGION 90 1010 92 1010 51 STRAND 111 1010 116 COLOUR_TEXT_REGION 111 1010 116 1010 51 STRAND 144 1010 150 COLOUR_TEXT_REGION 144 1010 150 1010 51 STRAND 181 1010 183 COLOUR_TEXT_REGION 181 1010 183 1010 51 HELIX 3 1010 16 COLOUR_TEXT_REGION 3 1010 16 1010 50 HELIX 34 1010 43 COLOUR_TEXT_REGION 34 1010 43 1010 50 HELIX 53 1010 61 COLOUR_TEXT_REGION 53 1010 61 1010 50 HELIX 78 1010 86 COLOUR_TEXT_REGION 78 1010 86 1010 50 HELIX 95 1010 105 COLOUR_TEXT_REGION 95 1010 105 1010 50 HELIX 127 1010 139 COLOUR_TEXT_REGION 127 1010 139 1010 50 HELIX 161 1010 175 COLOUR_TEXT_REGION 161 1010 175 1010 50 HELIX 187 1010 190 COLOUR_TEXT_REGION 187 1010 190 1010 50 HELIX 200 1010 206 COLOUR_TEXT_REGION 200 1010 206 1010 50 STRAND 21 1011 26 COLOUR_TEXT_REGION 21 1011 26 1011 51 STRAND 68 1011 71 COLOUR_TEXT_REGION 68 1011 71 1011 51 STRAND 91 1011 91 COLOUR_TEXT_REGION 91 1011 91 1011 51 STRAND 110 1011 116 COLOUR_TEXT_REGION 110 1011 116 1011 51 STRAND 199 1011 200 COLOUR_TEXT_REGION 199 1011 200 1011 51 HELIX 3 1011 16 COLOUR_TEXT_REGION 3 1011 16 1011 50 HELIX 33 1011 50 COLOUR_TEXT_REGION 33 1011 50 1011 50 HELIX 53 1011 62 COLOUR_TEXT_REGION 53 1011 62 1011 50 HELIX 78 1011 86 COLOUR_TEXT_REGION 78 1011 86 1011 50 HELIX 95 1011 105 COLOUR_TEXT_REGION 95 1011 105 1011 50 HELIX 127 1011 140 COLOUR_TEXT_REGION 127 1011 140 1011 50 HELIX 161 1011 175 COLOUR_TEXT_REGION 161 1011 175 1011 50 HELIX 187 1011 190 COLOUR_TEXT_REGION 187 1011 190 1011 50 HELIX 201 1011 207 COLOUR_TEXT_REGION 201 1011 207 1011 50