QUERY               : MIEITLKKPEDFLKVKETLTRMGIANNKDKVLYQSCHILQKKGLYYIVHFKEMLRMDGRQVEMTEEDEVRRDSIAWLLEDWGLIEIVPGQRTFMKDLTNNFRVISFKQKHEWKLVPKYTIGN : QUERY 
UniRef90_E3SQA9     : MVEVNLKEPDDFLKVRETLTRIGVASRKEKKLYQSCHILHKKGQYYIVHFKELFALDGKKVNLSENDIQRRNRIVKLLSDWGLVEIVKEAVVSDAAPLSQIKVIAYKDKGEWILESKYNIG- : UniRef90_E3SQA9
UniRef90_E3SJ40     : MVEVLLNEPDDFLKVRETLTRIGVASRKEKKLYQSCHILHKQGRYFIVHFKELFALDGKHANLTVNDVQRRNRITRLLADWGLISVVKEDSVSDIAPLNQIKVLAYKDKGEWILEQKYNIG- : UniRef90_E3SJ40
UniRef90_M4SLJ0     : MLEVSLKEPDDFLKIRETLTRIGVASRKEKKLYQSCHILHKKGKYYIVHFKELFALDGKPANITKNDVERRNRITKLLFDWGLVELATE--PTEIAPLNQIKVLSYKDKGDWTLESKYNIG- : UniRef90_M4SLJ0
UniRef90_E5DI56     : MIEITLKQPEDFLKVKETLTRMGIANNKDKVLYQSCHILQKQGKYYIVHFKEMLKLDGRPVTIDSEDYIRRDSIAQLLQGWGLLDIVTPDV-HLAEMQNNFRVITFQQKSEWTLKSKYTIG- : UniRef90_E5DI56
UniRef90_I3ULD9     : MAQVVLKEPDDFLKIRETLTRIGVASRREKKLYQSCHILHKKGKYYIVHFKELFALDGKRANLTLNDLQRRNRIIQLLVDWGLVTLDAASQEKIVDPLNQIKVIAFKDKENWTLESKYNIG- : UniRef90_I3ULD9
UniRef90_F5B416     : LVEVRLNQPDDFLKVRETLTRIGVASRTENKLYQSCHILHKQGKYYIVSFKELFLLDGKASDLSENDIQRRNRITKLLSDWGLVQVVDSTKIEEMVPVSQIKIIPFKEKKDWILEPKYQIGS : UniRef90_F5B416
UniRef90_K4I2N8     : MIEIKLKQPEDFLKVKETLTRMGIANNRDRVLYQSCHILQKQGLYYVVHFKEMLKLDGRPVTIDDEDIIRRDSIAQLLEDWGLIELV--DRGSLQAMQNNFRVITFKQKDDWKLIAKYTIG- : UniRef90_K4I2N8
UniRef90_A0A023W654 : MLQIELIKKDDFLKIRETLTRMGIANNKTKTLYQSCHILQKQGLYYIVHFKELLKLDGRPVEITDEDFQRRDSIAQLLEQWNLCKIVHKVGEKINEQVNNFRVISHKQKDQWSLIHKYKIGN : UniRef90_A0A023W654
UniRef90_D9ICA0     : MLEIKLSSDDSFLKIRETLTRIGIANNKKKMLWQSCHILQKQGRYFIVHFKELLRLDGRQVDMTEDDELRRNNIARLLEEWGMIEILTPDLKFSEE--NNFRVLTHAQKAEWTLKYKYRIGH : UniRef90_D9ICA0
UniRef90_E1A2P2     : MLQIKLKTDDDFLKIRETLTRIGIANNVAKKLYQSCHILQKQGKYYIVHFKELLQLDGRQVEIGQEDIDRRNDIATLLQEWNMCEIVSDQ---VAPGNNFFRVISHKDKHNWTLIHKYKFG- : UniRef90_E1A2P2
UniRef90_E1A1T8     : MIQIDINHPDDFLKIAETLTRIGIASNKEKKLYQSCHILQKQGKYFIVHFKEMLKLDGLPVSISEEDISRRNNIASLLQSWNLCKILTP---IELSSHNNFRVISHKQKGEWQLIAKYKFG- : UniRef90_E1A1T8
UniRef90_E5E480     : MINIILNTPDDFLKVKETLTRMGIANNKDKVLYQSCHILQKQGKYFIAHFKDMMKLDGKAVNMSEDDLLRTKSIAKTLEAWGLIK----TDLGDVEISNNFRVIKFSQKSEWTLKSKYTVGN : UniRef90_E5E480
UniRef90_A7XEX2     : MIEINLISPENFLKIKETLTRCGIANNRDKTLYQSCHILQKKGRYYIVHFKELLKLDGRSVKMTWEDELRRNNIAKLLAQWNLCTLIDSD--FETTEVNNFRVLSFKQKEEWTLIEKYQIG- : UniRef90_A7XEX2
UniRef90_S5MUZ4     : -VEINLKSSEDFLKIKETLTRIGVASRKTNTLTQSCHILHKRGRYAILHFKELFIMDGKETTFSEEDAARRNTIASLLEEWGLVQIVTPVTTPKASMSN-IKIIPFKDRDNWTLTSKYSVGG : UniRef90_S5MUZ4
UniRef90_E5EYL9     : MIKITLNQPSDFLKVKETLTRMGIANNKTRVLYQSCHILQKRGEYFIAHFKDLMRMDGKKVDIDDEDNLRTLSIAKMLESWNLLKI---DQELDQEPVNNFRIISFKQKSEWELVPKYIIG- : UniRef90_E5EYL9
UniRef90_Q6WI72     : -LEIQLPDDDAFLKIRETLTRIGIANNKTNTLYQSCHILQKRGVYFLVHFKELLALDGRCVEITAEDIERRNNIAKLLEDWNLCKIAPESHEFTGD--NKFRVISFRDSKNWNLRYKYKIGG : UniRef90_Q6WI72
UniRef90_W0B0R5     : MIPIKLVQSENFLKVKETLTRMGIANQRDKVLYQSCHILKKQDKFYIVHFKDMMRLDGKVVNISDEDVQRTVSIAKTLETWGLVEV--EFAPPEIEVTNNFRVIKAAQKAEWTLKSKYVVG- : UniRef90_W0B0R5
UniRef90_Q6J2P8     : MIEITPHQ-GAFLQIKETLTRMGIANSRDKVLYQSCHILQKQGRYYIAHFKDLLKLDGKPTDITEEDKVRTLSIATMLESWDLCQI---ETQTDLVPTNNFRIIKHSQKAEWKLVPKYTIG- : UniRef90_Q6J2P8
UniRef90_Q6RHT9     : MIRIGLYNPQDFLKVRETLTRIGIANRETKHIWQSCHIIQKNGFYYVAHFKELLRRDGRDVVMSQEDVDRCYDIAYLLEDWDLCSVID---TMERPNRFEFHVISHKEKSEWIHKSKYIF-- : UniRef90_Q6RHT9
UniRef90_S6CFF6     : MVEVELNQPGIFLGIKETLSRIGVNTRQEETLYQTCHILHKSGKYFIVHFKHLFMLDGHYNGFQREDVLRMNRIIRLLEQWKMIKVLPEQVTECADMSR-IKVVKHDQIADWKLVPKYII-- : UniRef90_S6CFF6
UniRef90_I6WC18     : MIRIGIQEATDFLSIQETLTRIGIANREQKKLWQSCHIVRKHGFYYIAHFKELLRRDGLDVVISQEDIDRRDDITSLLEDWGLCSIID---LINPPKVYEFHIIQHKDKPDWTLKSKYIF-- : UniRef90_I6WC18
UniRef90_K7YGV0     : LVEVDLKARDTFFMITETLTRVGVNGEPKNVLYQTCHITQRGGKYYIVHFKHFYMFEGRRNGLCREDILRMNRIIRLLEQWGMIKIKHPEQITELAQLAHIKVVKHHDAVNWTLLPKYDV-- : UniRef90_K7YGV0
UniRef90_C9DGI2     : LVEVKLKESDQGSRVRETLERIGFAADTPDVLNQVAHLITLEGKQYIAHFKFLLVFHGTDNRLKDSDIARQNKAIEMLVNWGFIEVVPTQMEGVSPQTAGVKVVRHQDKGNWKLTPKFR--- : UniRef90_C9DGI2

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------12 :
OrigSeq             : MIEITLKKPEDFLKVKETLTRMGIANNKDKVLYQSCHILQKKGLYYIVHFKEMLRMDGRQVEMTEEDEVRRDSIAWLLEDWGLIEIVPGQRTFMKDLTNNFRVISFKQKHEWKLVPKYTIGN : OrigSeq

Jnet                : --EEE-------EEEEEEEEEEE--------EEEEEEEEE---EEEEEEEHHHHHH--------HHHHHHHHHHHHHHH---EEEEE-------------EEEEEE------EEEE-EE--- : Jnet
jhmm                : --EEE------EEEEEEEEEEEE--------EEEEEEEEEE--EEEEEEEHHHHHHH-------HHHHHHHHHHHHHHH---EEEEE-------------EEEEEE---------------- : jhmm
jpssm               : -EEEEE------HHHHHHHHHEE-------EEEEEEEEE----EEEEEEEHHHHH---------HHHHHHHHHHHHHHH----EEE--------------EEEEEEE-----EEEEEEE--- : jpssm

Lupas 14            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : -B-B-B-----BB-B--BBBBBBBB------BBBBBBBB-----BBBBBBBBBB-B-B--B-B---BB-BB--BB-BB--B-BB-BB-----------B-B-BB-B-----B-B---B---- : Jnet_25
Jnet_5              : ---B----------B---B--B------------BB-B--------BB-B--BB--------B----------BB-BB-----B----------------B-BB------------------ : Jnet_5
Jnet_0              : -----------------------------------B-----------B-B-----------------------B------------------------------------------------ : Jnet_0
Jnet Rel            : 72886158876023322113422478887413112211121873777641114411277877627899999999999850672564177765422323561589971688841321011599 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.