SILENT_MODE
BLOCK_FILE jp_FMoxX3J.concise.blc
MAX_NSEQ 109
MAX_INPUT_LEN 111
OUTPUT_FILE jp_FMoxX3J.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 89 98   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 99 89 108 H SPACE
SUB_CHARS 1 99 89 108 E SPACE
SUB_CHARS 1 99 89 108 - SPACE
STRAND 29 102 34
COLOUR_TEXT_REGION 29 102 34 102 51
STRAND 39 102 40
COLOUR_TEXT_REGION 39 102 40 102 51
STRAND 59 102 62
COLOUR_TEXT_REGION 59 102 62 102 51
STRAND 67 102 69
COLOUR_TEXT_REGION 67 102 69 102 51
STRAND 82 102 86
COLOUR_TEXT_REGION 82 102 86 102 51
HELIX 4 102 18
COLOUR_TEXT_REGION 4 102 18 102 50
HELIX 79 102 81
COLOUR_TEXT_REGION 79 102 81 102 50
STRAND 29 107 35
COLOUR_TEXT_REGION 29 107 35 107 51
STRAND 39 107 40
COLOUR_TEXT_REGION 39 107 40 107 51
STRAND 59 107 62
COLOUR_TEXT_REGION 59 107 62 107 51
STRAND 67 107 69
COLOUR_TEXT_REGION 67 107 69 107 51
STRAND 82 107 87
COLOUR_TEXT_REGION 82 107 87 107 51
HELIX 4 107 23
COLOUR_TEXT_REGION 4 107 23 107 50
HELIX 79 107 81
COLOUR_TEXT_REGION 79 107 81 107 50
STRAND 28 108 34
COLOUR_TEXT_REGION 28 108 34 108 51
STRAND 59 108 62
COLOUR_TEXT_REGION 59 108 62 108 51
STRAND 67 108 70
COLOUR_TEXT_REGION 67 108 70 108 51
STRAND 82 108 86
COLOUR_TEXT_REGION 82 108 86 108 51
HELIX 3 108 15
COLOUR_TEXT_REGION 3 108 15 108 50
HELIX 80 108 81
COLOUR_TEXT_REGION 80 108 81 108 50