QUERY           : HECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPCGN : QUERY 
UniRef90_P0CX80 : HECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPCGN : UniRef90_P0CX80
UniRef90_J4U064 : HECQCQCGSCKNNKQCQKSCRCPIGCNSDDKCPCG- : UniRef90_J4U064

                : 1---------11--------21--------31---- :
OrigSeq         : HECQCQCGSCKNNEQCQKSCSCPTGCNSDDKCPCGN : OrigSeq

Jnet            : -------------HH--------------------- : Jnet
jhmm            : ------------------------------------ : jhmm
jpssm           : ----EE-------HHHHHH----------------- : jpssm

Lupas 14        : ------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------ : Lupas 28

Jnet_25         : --B-B-B--B-----B---B-B--BB-----B---- : Jnet_25
Jnet_5          : ---------------B-----B-------------- : Jnet_5
Jnet_0          : ------------------------------------ : Jnet_0
Jnet Rel        : 997112157776301002324677777667777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.