Filename Description -------- ----------- jp_JdQJL6w.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_JdQJL6w.als Alscript command file. Used to generate PS/PDF outputjp_JdQJL6w.blast.gz PSIBLAST output (compressed) jp_JdQJL6w.coils.csv The output from coils in CSV format jp_JdQJL6w.coilseq.lupas_14 The output from coils using a window length of 14 jp_JdQJL6w.coilseq.lupas_21 The output from coils using a window length of 21 jp_JdQJL6w.coilseq.lupas_28 The output from coils using a window length of 28 jp_JdQJL6w.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_JdQJL6w.concise.blc A BLC file of the prediction and alignment jp_JdQJL6w.concise.pdf A PDF file of the prediction and alignment jp_JdQJL6w.fasta Input query sequence in FASTA format jp_JdQJL6w.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_JdQJL6w.hmm The HHMer2 profile of the alignment jp_JdQJL6w.html A HTML file of the prediction and alignment jp_JdQJL6w.input Your raw input jp_JdQJL6w.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_JdQJL6w.jnet The output from Jnet jp_JdQJL6w.profile PSIBLAST profile jp_JdQJL6w.pssm PSIBLAST PSSM in a format for Jnet jp_JdQJL6w.seq Your sequence jp_JdQJL6w.simple.html The brief HTML output of the query sequence and prediction only jp_JdQJL6w.svg.html A Jalview generated SVG file with summary of the results.