SILENT_MODE BLOCK_FILE jp_JdQJL6w.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_JdQJL6w.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 98 12 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 13 98 22 H SPACE SUB_CHARS 1 13 98 22 E SPACE SUB_CHARS 1 13 98 22 - SPACE STRAND 4 16 9 COLOUR_TEXT_REGION 4 16 9 16 51 STRAND 31 16 38 COLOUR_TEXT_REGION 31 16 38 16 51 STRAND 41 16 46 COLOUR_TEXT_REGION 41 16 46 16 51 STRAND 67 16 70 COLOUR_TEXT_REGION 67 16 70 16 51 STRAND 84 16 88 COLOUR_TEXT_REGION 84 16 88 16 51 STRAND 91 16 96 COLOUR_TEXT_REGION 91 16 96 16 51 HELIX 15 16 23 COLOUR_TEXT_REGION 15 16 23 16 50 HELIX 47 16 64 COLOUR_TEXT_REGION 47 16 64 16 50 STRAND 4 21 9 COLOUR_TEXT_REGION 4 21 9 21 51 STRAND 31 21 38 COLOUR_TEXT_REGION 31 21 38 21 51 STRAND 41 21 47 COLOUR_TEXT_REGION 41 21 47 21 51 STRAND 67 21 70 COLOUR_TEXT_REGION 67 21 70 21 51 STRAND 84 21 88 COLOUR_TEXT_REGION 84 21 88 21 51 STRAND 91 21 96 COLOUR_TEXT_REGION 91 21 96 21 51 HELIX 15 21 20 COLOUR_TEXT_REGION 15 21 20 21 50 HELIX 48 21 64 COLOUR_TEXT_REGION 48 21 64 21 50 STRAND 4 22 9 COLOUR_TEXT_REGION 4 22 9 22 51 STRAND 31 22 37 COLOUR_TEXT_REGION 31 22 37 22 51 STRAND 41 22 46 COLOUR_TEXT_REGION 41 22 46 22 51 STRAND 67 22 70 COLOUR_TEXT_REGION 67 22 70 22 51 STRAND 84 22 88 COLOUR_TEXT_REGION 84 22 88 22 51 STRAND 91 22 96 COLOUR_TEXT_REGION 91 22 96 22 51 HELIX 14 22 25 COLOUR_TEXT_REGION 14 22 25 22 50 HELIX 47 22 55 COLOUR_TEXT_REGION 47 22 55 22 50 HELIX 57 22 64 COLOUR_TEXT_REGION 57 22 64 22 50