QUERY           : MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVN : QUERY 
UniRef90_B1YC70 : MRRHFIVYTTSKKEAVVARDLCDCLYYYDSGVMCEALAPSRVYVHTEAEYLERCLGMRYFKALVKGVEAFDDVSRQRPSCAGCRVVEVGGRYFI---- : UniRef90_B1YC70
UniRef90_A4WGV4 : -RKYIIVRTIPKKEGQVARDLCDCIYFHDSEVMCVPVAVGRVYVYTLVGALQNCLAMDYFKKLVRGFEVYDEVSHYEPSCDDCIVVKIGEVYFVRRVG : UniRef90_A4WGV4
UniRef90_A3MS24 : ---HVLVITVPKKERIVARDLCDCLYYYDQAVECRVLSPSRVYIRTSIDYLHECLKLKYFEKLIKNIEIFDFVSTSKPSCTECRVIQIGDLYFVK--- : UniRef90_A3MS24
UniRef90_F2L2Z0 : ----ILATTIGGKEAAIARDLCDCLYGQDTAVVCEPISPGVFYAKFSDKSLDRCLSMKYFKAMIKRVELYDGVSDSAPSQGYSRARRVGKYIFIK--- : UniRef90_F2L2Z0
UniRef90_A1RSA4 : MRKAVIIHTVPKKEAIVARDLCDCLYYYDQEVVCKVVTVGRVYIYTHVEYLDYCINMKYFRSLIKKVEYSGDVS------------------------ : UniRef90_A1RSA4
UniRef90_G4RLL7 : -----LLTTLGGKERSVAQDLCDCLYGGDTQVRCEPIYPGVLFVEFRRETLELCLSMKYFRVLVRRIEIYEKVVRSTETPPG--AKKVGDYIFLGR-- : UniRef90_G4RLL7
UniRef90_G7VBC7 : -RGHVLIRTAPRKDKVVARDLCDCLYYYDQSVKCEVIKPGFVYVNTFTTYLGECLNLFYFKKLLK--------------------------------- : UniRef90_G7VBC7
UniRef90_H6QDP4 : --------------------------------MCVPVAVGRVYVYTLVGAFQNCLAMDYFKKLVRGFEVYDEVSHYEPSCDDCIVVKIGEVYFVRRVG : UniRef90_H6QDP4

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91------ :
OrigSeq         : MKKHIIIKTIPKKEEIISRDLCDCIYYYDNSVICKPIGPSKVYVSTSLENLEKCLQLHYFKKLVKNIEIFDEVHNSKPNCDKCLIVEIGGVYFVRRVN : OrigSeq

Jnet            : ---EEEEEE-----HHHHHHHHH-------EEEEEEEE--EEEEEEHHHHHHHHHHHHHHHHHH--EEEE-------------EEEEE--EEEEEE-- : Jnet
jhmm            : ---EEEEEE-----HHHHHH----------EEEEEEEE--EEEEEEEHHHHHHHHHHHHHHHHH--EEEE-------------EEEEE--EEEEEE-- : jhmm
jpssm           : ---EEEEEE----HHHHHHHHHHHH-----EEEEEEE---EEEEEEHHHHHHHHH-HHHHHHHH--EEEE-------------EEEEE--EEEEEE-- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ---BBBBBBB------BB-BBBBBBBBBB--B-B-BB-BBBBBB-BBB-BB--BB-B-BB--BB--B-BB--B------B--BBBB-BB-BBBB---- : Jnet_25
Jnet_5          : ----BBB---------BB--BB-BB------B-B-------B-B------B--BB----B--BB--B-----------------B--B----BB---- : Jnet_5
Jnet_0          : -----B--------------B--------------------B-B------------------------------------------------------ : Jnet_0
Jnet Rel        : 99458887447862789999311032788558999862516888501889998750798888731247753664566777763478735558998479 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.