SILENT_MODE BLOCK_FILE jp_yycvKgZ.concise.blc MAX_NSEQ 1003 MAX_INPUT_LEN 1005 OUTPUT_FILE jp_yycvKgZ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 210 992 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 993 210 1002 H SPACE SUB_CHARS 1 993 210 1002 E SPACE SUB_CHARS 1 993 210 1002 - SPACE STRAND 18 996 21 COLOUR_TEXT_REGION 18 996 21 996 51 STRAND 27 996 28 COLOUR_TEXT_REGION 27 996 28 996 51 STRAND 58 996 62 COLOUR_TEXT_REGION 58 996 62 996 51 STRAND 68 996 73 COLOUR_TEXT_REGION 68 996 73 996 51 STRAND 96 996 100 COLOUR_TEXT_REGION 96 996 100 996 51 STRAND 105 996 111 COLOUR_TEXT_REGION 105 996 111 996 51 STRAND 130 996 134 COLOUR_TEXT_REGION 130 996 134 996 51 STRAND 139 996 143 COLOUR_TEXT_REGION 139 996 143 996 51 STRAND 158 996 159 COLOUR_TEXT_REGION 158 996 159 996 51 HELIX 3 996 14 COLOUR_TEXT_REGION 3 996 14 996 50 HELIX 43 996 52 COLOUR_TEXT_REGION 43 996 52 996 50 HELIX 79 996 88 COLOUR_TEXT_REGION 79 996 88 996 50 HELIX 182 996 192 COLOUR_TEXT_REGION 182 996 192 996 50 HELIX 204 996 207 COLOUR_TEXT_REGION 204 996 207 996 50 STRAND 18 1001 21 COLOUR_TEXT_REGION 18 1001 21 1001 51 STRAND 27 1001 28 COLOUR_TEXT_REGION 27 1001 28 1001 51 STRAND 59 1001 62 COLOUR_TEXT_REGION 59 1001 62 1001 51 STRAND 68 1001 73 COLOUR_TEXT_REGION 68 1001 73 1001 51 STRAND 96 1001 100 COLOUR_TEXT_REGION 96 1001 100 1001 51 STRAND 105 1001 110 COLOUR_TEXT_REGION 105 1001 110 1001 51 STRAND 130 1001 135 COLOUR_TEXT_REGION 130 1001 135 1001 51 STRAND 139 1001 143 COLOUR_TEXT_REGION 139 1001 143 1001 51 STRAND 157 1001 160 COLOUR_TEXT_REGION 157 1001 160 1001 51 HELIX 3 1001 14 COLOUR_TEXT_REGION 3 1001 14 1001 50 HELIX 43 1001 51 COLOUR_TEXT_REGION 43 1001 51 1001 50 HELIX 79 1001 88 COLOUR_TEXT_REGION 79 1001 88 1001 50 HELIX 182 1001 192 COLOUR_TEXT_REGION 182 1001 192 1001 50 HELIX 204 1001 207 COLOUR_TEXT_REGION 204 1001 207 1001 50 STRAND 18 1002 21 COLOUR_TEXT_REGION 18 1002 21 1002 51 STRAND 27 1002 28 COLOUR_TEXT_REGION 27 1002 28 1002 51 STRAND 58 1002 62 COLOUR_TEXT_REGION 58 1002 62 1002 51 STRAND 68 1002 73 COLOUR_TEXT_REGION 68 1002 73 1002 51 STRAND 96 1002 100 COLOUR_TEXT_REGION 96 1002 100 1002 51 STRAND 105 1002 111 COLOUR_TEXT_REGION 105 1002 111 1002 51 STRAND 129 1002 134 COLOUR_TEXT_REGION 129 1002 134 1002 51 STRAND 139 1002 142 COLOUR_TEXT_REGION 139 1002 142 1002 51 STRAND 167 1002 169 COLOUR_TEXT_REGION 167 1002 169 1002 51 STRAND 195 1002 200 COLOUR_TEXT_REGION 195 1002 200 1002 51 HELIX 3 1002 13 COLOUR_TEXT_REGION 3 1002 13 1002 50 HELIX 43 1002 52 COLOUR_TEXT_REGION 43 1002 52 1002 50 HELIX 80 1002 87 COLOUR_TEXT_REGION 80 1002 87 1002 50 HELIX 185 1002 192 COLOUR_TEXT_REGION 185 1002 192 1002 50 HELIX 205 1002 207 COLOUR_TEXT_REGION 205 1002 207 1002 50