SILENT_MODE BLOCK_FILE jp_zCu4UWP.concise.blc MAX_NSEQ 306 MAX_INPUT_LEN 308 OUTPUT_FILE jp_zCu4UWP.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 157 295 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 296 157 305 H SPACE SUB_CHARS 1 296 157 305 E SPACE SUB_CHARS 1 296 157 305 - SPACE STRAND 4 299 6 COLOUR_TEXT_REGION 4 299 6 299 51 STRAND 63 299 65 COLOUR_TEXT_REGION 63 299 65 299 51 STRAND 76 299 78 COLOUR_TEXT_REGION 76 299 78 299 51 STRAND 152 299 156 COLOUR_TEXT_REGION 152 299 156 299 51 HELIX 10 299 18 COLOUR_TEXT_REGION 10 299 18 299 50 HELIX 35 299 46 COLOUR_TEXT_REGION 35 299 46 299 50 HELIX 81 299 91 COLOUR_TEXT_REGION 81 299 91 299 50 HELIX 96 299 101 COLOUR_TEXT_REGION 96 299 101 299 50 HELIX 105 299 110 COLOUR_TEXT_REGION 105 299 110 299 50 HELIX 124 299 148 COLOUR_TEXT_REGION 124 299 148 299 50 STRAND 4 304 7 COLOUR_TEXT_REGION 4 304 7 304 51 STRAND 32 304 33 COLOUR_TEXT_REGION 32 304 33 304 51 STRAND 63 304 65 COLOUR_TEXT_REGION 63 304 65 304 51 STRAND 76 304 79 COLOUR_TEXT_REGION 76 304 79 304 51 STRAND 151 304 156 COLOUR_TEXT_REGION 151 304 156 304 51 HELIX 10 304 18 COLOUR_TEXT_REGION 10 304 18 304 50 HELIX 35 304 46 COLOUR_TEXT_REGION 35 304 46 304 50 HELIX 81 304 91 COLOUR_TEXT_REGION 81 304 91 304 50 HELIX 96 304 101 COLOUR_TEXT_REGION 96 304 101 304 50 HELIX 105 304 110 COLOUR_TEXT_REGION 105 304 110 304 50 HELIX 124 304 148 COLOUR_TEXT_REGION 124 304 148 304 50 STRAND 4 305 6 COLOUR_TEXT_REGION 4 305 6 305 51 STRAND 63 305 65 COLOUR_TEXT_REGION 63 305 65 305 51 STRAND 76 305 77 COLOUR_TEXT_REGION 76 305 77 305 51 STRAND 152 305 156 COLOUR_TEXT_REGION 152 305 156 305 51 HELIX 10 305 18 COLOUR_TEXT_REGION 10 305 18 305 50 HELIX 35 305 46 COLOUR_TEXT_REGION 35 305 46 305 50 HELIX 81 305 91 COLOUR_TEXT_REGION 81 305 91 305 50 HELIX 96 305 101 COLOUR_TEXT_REGION 96 305 101 305 50 HELIX 105 305 110 COLOUR_TEXT_REGION 105 305 110 305 50 HELIX 124 305 148 COLOUR_TEXT_REGION 124 305 148 305 50