SILENT_MODE
BLOCK_FILE jp_mF2oqM5.concise.blc
MAX_NSEQ 271
MAX_INPUT_LEN 273
OUTPUT_FILE jp_mF2oqM5.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 62 260   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 261 62 270 H SPACE
SUB_CHARS 1 261 62 270 E SPACE
SUB_CHARS 1 261 62 270 - SPACE
STRAND 12 264 13
COLOUR_TEXT_REGION 12 264 13 264 51
STRAND 32 264 39
COLOUR_TEXT_REGION 32 264 39 264 51
STRAND 56 264 60
COLOUR_TEXT_REGION 56 264 60 264 51
HELIX 4 264 8
COLOUR_TEXT_REGION 4 264 8 264 50
HELIX 43 264 49
COLOUR_TEXT_REGION 43 264 49 264 50
STRAND 4 269 5
COLOUR_TEXT_REGION 4 269 5 269 51
STRAND 12 269 14
COLOUR_TEXT_REGION 12 269 14 269 51
STRAND 32 269 39
COLOUR_TEXT_REGION 32 269 39 269 51
STRAND 56 269 60
COLOUR_TEXT_REGION 56 269 60 269 51
HELIX 43 269 49
COLOUR_TEXT_REGION 43 269 49 269 50
STRAND 32 270 38
COLOUR_TEXT_REGION 32 270 38 270 51
STRAND 56 270 60
COLOUR_TEXT_REGION 56 270 60 270 51
HELIX 4 270 9
COLOUR_TEXT_REGION 4 270 9 270 50
HELIX 43 270 50
COLOUR_TEXT_REGION 43 270 50 270 50