SILENT_MODE BLOCK_FILE jp_kqXsLTd.concise.blc MAX_NSEQ 317 MAX_INPUT_LEN 319 OUTPUT_FILE jp_kqXsLTd.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 176 306 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 307 176 316 H SPACE SUB_CHARS 1 307 176 316 E SPACE SUB_CHARS 1 307 176 316 - SPACE STRAND 100 310 103 COLOUR_TEXT_REGION 100 310 103 310 51 HELIX 2 310 10 COLOUR_TEXT_REGION 2 310 10 310 50 HELIX 13 310 22 COLOUR_TEXT_REGION 13 310 22 310 50 HELIX 25 310 50 COLOUR_TEXT_REGION 25 310 50 310 50 HELIX 57 310 78 COLOUR_TEXT_REGION 57 310 78 310 50 HELIX 86 310 99 COLOUR_TEXT_REGION 86 310 99 310 50 HELIX 110 310 129 COLOUR_TEXT_REGION 110 310 129 310 50 HELIX 135 310 158 COLOUR_TEXT_REGION 135 310 158 310 50 STRAND 101 315 104 COLOUR_TEXT_REGION 101 315 104 315 51 HELIX 2 315 10 COLOUR_TEXT_REGION 2 315 10 315 50 HELIX 13 315 22 COLOUR_TEXT_REGION 13 315 22 315 50 HELIX 25 315 50 COLOUR_TEXT_REGION 25 315 50 315 50 HELIX 56 315 78 COLOUR_TEXT_REGION 56 315 78 315 50 HELIX 88 315 99 COLOUR_TEXT_REGION 88 315 99 315 50 HELIX 111 315 129 COLOUR_TEXT_REGION 111 315 129 315 50 HELIX 135 315 158 COLOUR_TEXT_REGION 135 315 158 315 50 STRAND 100 316 103 COLOUR_TEXT_REGION 100 316 103 316 51 HELIX 2 316 22 COLOUR_TEXT_REGION 2 316 22 316 50 HELIX 25 316 50 COLOUR_TEXT_REGION 25 316 50 316 50 HELIX 59 316 78 COLOUR_TEXT_REGION 59 316 78 316 50 HELIX 85 316 96 COLOUR_TEXT_REGION 85 316 96 316 50 HELIX 99 316 99 COLOUR_TEXT_REGION 99 316 99 316 50 HELIX 109 316 130 COLOUR_TEXT_REGION 109 316 130 316 50 HELIX 135 316 158 COLOUR_TEXT_REGION 135 316 158 316 50