SILENT_MODE BLOCK_FILE jp_mfs3jkj.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_mfs3jkj.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 180 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 180 15 H SPACE SUB_CHARS 1 6 180 15 E SPACE SUB_CHARS 1 6 180 15 - SPACE STRAND 148 9 153 COLOUR_TEXT_REGION 148 9 153 9 51 STRAND 173 9 176 COLOUR_TEXT_REGION 173 9 176 9 51 HELIX 8 9 14 COLOUR_TEXT_REGION 8 9 14 9 50 HELIX 20 9 38 COLOUR_TEXT_REGION 20 9 38 9 50 HELIX 46 9 61 COLOUR_TEXT_REGION 46 9 61 9 50 HELIX 67 9 79 COLOUR_TEXT_REGION 67 9 79 9 50 HELIX 81 9 111 COLOUR_TEXT_REGION 81 9 111 9 50 HELIX 118 9 130 COLOUR_TEXT_REGION 118 9 130 9 50 HELIX 146 9 147 COLOUR_TEXT_REGION 146 9 147 9 50 HELIX 156 9 168 COLOUR_TEXT_REGION 156 9 168 9 50 STRAND 147 14 153 COLOUR_TEXT_REGION 147 14 153 14 51 STRAND 173 14 176 COLOUR_TEXT_REGION 173 14 176 14 51 HELIX 6 14 14 COLOUR_TEXT_REGION 6 14 14 14 50 HELIX 20 14 38 COLOUR_TEXT_REGION 20 14 38 14 50 HELIX 46 14 62 COLOUR_TEXT_REGION 46 14 62 14 50 HELIX 67 14 79 COLOUR_TEXT_REGION 67 14 79 14 50 HELIX 81 14 111 COLOUR_TEXT_REGION 81 14 111 14 50 HELIX 119 14 129 COLOUR_TEXT_REGION 119 14 129 14 50 HELIX 156 14 168 COLOUR_TEXT_REGION 156 14 168 14 50 STRAND 150 15 153 COLOUR_TEXT_REGION 150 15 153 15 51 STRAND 173 15 177 COLOUR_TEXT_REGION 173 15 177 15 51 HELIX 8 15 14 COLOUR_TEXT_REGION 8 15 14 15 50 HELIX 21 15 23 COLOUR_TEXT_REGION 21 15 23 15 50 HELIX 25 15 37 COLOUR_TEXT_REGION 25 15 37 15 50 HELIX 46 15 60 COLOUR_TEXT_REGION 46 15 60 15 50 HELIX 67 15 79 COLOUR_TEXT_REGION 67 15 79 15 50 HELIX 82 15 111 COLOUR_TEXT_REGION 82 15 111 15 50 HELIX 118 15 131 COLOUR_TEXT_REGION 118 15 131 15 50 HELIX 145 15 149 COLOUR_TEXT_REGION 145 15 149 15 50 HELIX 156 15 169 COLOUR_TEXT_REGION 156 15 169 15 50