QUERY           : VDELGFNEAERQKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFTCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGKKLNEIVQDIGTKYIILSKNK : QUERY 
UniRef90_M3SNX6 : --ELGFKEIEQQKILNSQSGLIANAYDAREIFANNYLSGLKDV--PREFLEVVQQLQIHLGEHLVDFNQYAQYLRNIVSMSYDRCYAELVYAERTIEDALKREELILDIANSFNNFTNDHVFQISNLVASYVSSEYLPTYIDGNLKGVMLKILGIDDFGNKINEIIQDIGTKYSILSKNK : UniRef90_M3SNX6

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171------- :
OrigSeq         : VDELGFNEAERQKILDSNSSLMRNANEVRDKFIQNYATSLKDSNDPQDFLRRVQELRINMQKNFISFDAYYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISDNFNNFTCDEVARISDLVASYLPREYLPPFIDGNMMGVAFQILGIDDFGKKLNEIVQDIGTKYIILSKNK : OrigSeq

Jnet            : -------HHHHHHH-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---------------HHEEEEEE--HHHHHHHHHHHHH----EEEE---- : Jnet
jhmm            : -----HHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-----------------EEEEEEE--HHHHHHHHHHHHH----EEEE---- : jhmm
jpssm           : -------HHHHHHH------HHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHH------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-------------HHHHHEEEE--HHHHHHHHHHHHHH---EEEEE--- : jpssm

Lupas 14        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28        : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28

Jnet_25         : ---B-B-------BB-----BB--B--BB--BB--BB-BB-----B--BB--B--B-B-B---BB-B--BB-BB-BBBBBBB--B---B-BB--BB---B-B--BBB-BB--B--BBB--BB-BB-BBB-BB---BBB-BB-B-BBBBBB-BBBBB-BB--B--BB--BB--BBBB---- : Jnet_25
Jnet_5          : ---------------------------B---BB----------------B--B--B--------B-B--B---B--BB-B----B-------------------BB--B-----------B--B---B--------B---B---B--B-B-B--B------B--BB-------------- : Jnet_5
Jnet_0          : ----------------------------------------------------B----------------------------------------------------B-------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 999882137888752677333314789999999986207888764288999988877764226313589999999987422017999999999987217888888877743057774289998743777223677777765542111131233020356899999987048458880599 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.