SILENT_MODE
BLOCK_FILE jp_FSYNIsF.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_FSYNIsF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 106 13   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 14 106 23 H SPACE
SUB_CHARS 1 14 106 23 E SPACE
SUB_CHARS 1 14 106 23 - SPACE
HELIX 3 17 18
COLOUR_TEXT_REGION 3 17 18 17 50
HELIX 28 17 37
COLOUR_TEXT_REGION 28 17 37 17 50
HELIX 46 17 52
COLOUR_TEXT_REGION 46 17 52 17 50
HELIX 71 17 103
COLOUR_TEXT_REGION 71 17 103 17 50
HELIX 2 22 19
COLOUR_TEXT_REGION 2 22 19 22 50
HELIX 28 22 37
COLOUR_TEXT_REGION 28 22 37 22 50
HELIX 46 22 52
COLOUR_TEXT_REGION 46 22 52 22 50
HELIX 71 22 103
COLOUR_TEXT_REGION 71 22 103 22 50
STRAND 60 23 60
COLOUR_TEXT_REGION 60 23 60 23 51
HELIX 3 23 17
COLOUR_TEXT_REGION 3 23 17 23 50
HELIX 28 23 37
COLOUR_TEXT_REGION 28 23 37 23 50
HELIX 45 23 52
COLOUR_TEXT_REGION 45 23 52 23 50
HELIX 71 23 104
COLOUR_TEXT_REGION 71 23 104 23 50