QUERY           : MTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQARIYEQLTIDLWEDAEDLLNEYLEEVEE : QUERY 
UniRef90_K4FBP3 : MTYSQVYNTAHAALVERIWDDAIDCIDNAHDAIHEVADSTVPIYYADIFSVMASEGIDHFFEDSGLMPDTKDVTVVLQARIYEQLTIDLRERVQDMIDAYIDSAED : UniRef90_K4FBP3
UniRef90_K4PB04 : -AYYELLAATVEAFNERIQEDQLTEHHDYHDALHEVVDRMVPHYYWEIFTVMAADGIDVEFDDAGLMPDTKDVTRILQARIYEALYNDVPSDS------------- : UniRef90_K4PB04
UniRef90_F8R4P7 : -AYYELLAATVEAFNEHIQYDKLTEDDDWYDALHEVVDSHVPHYYHEIFTVMAADGIDHEFDDSDLIPDTKDVSRICQARIYEALYNDILNDSRVIWCE------- : UniRef90_F8R4P7
UniRef90_M1E358 : MTYANVYNHAYSLLDEYIRYEDVRDYDEATDKIHEAADNAVPVYYKDIFSVMASGGIDHEFEDSGLIPDTKDVTRILQARIYEQLTIDLYEVVADLLN-------- : UniRef90_M1E358
UniRef90_Q2WC28 : -AYYNLLAATVEAFNERIQYDEIREGDDYSDALHEVVDSNVPVYYSEIFTVMAADGIDIEFEDAGLIPDTKDVTKILQARIYESLYNDVPNDSDVVWYEDEEE--- : UniRef90_Q2WC28
UniRef90_Q7Y5R4 : MTYSDVYNHAYGLLKEYIRYDDVRNEDDLSDKIHEAAGNAVPHWYADIFSVMASDGIDLEFDDSGLMPDTKDVTYILQARIHEQLTIDL----------------- : UniRef90_Q7Y5R4
UniRef90_W6PUN0 : -AYYKLVADAVKAFNERIQYDQIAEGDEYHDALHEVVDDYVPHYYSEIFTVMAADGIDHEFEDSGLMPESMDVTVILQARIYEALYNDVQNDCGLVWYEAEEEDDE : UniRef90_W6PUN0
UniRef90_B4YQI0 : -TFNELYASAKEDLEAAIRHVTDTDDDDIRDRIHEIADSNVPIYNGDVFAVFADGGISYEMDDSGLIEGVTDVLHILRVRIYEELINCLYGDLEDCVTAYVEELED : UniRef90_B4YQI0
UniRef90_I6QAF6 : ----------------------------------MAADSAIPHYYSDIFSVMASEGIDLEFEDSGLMPDTKDVIRILQARIYEQLTIDLWEDAEDLLNEYLEEV-- : UniRef90_I6QAF6

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101--- :
OrigSeq         : MTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQARIYEQLTIDLWEDAEDLLNEYLEEVEE : OrigSeq

Jnet            : --HHHHHHHHHHHHHHHH---------HHHHHHHHHH--------HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : Jnet
jhmm            : -HHHHHHHHHHHHHHHHHH--------HHHHHHHHHH--------HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--- : jhmm
jpssm           : --HHHHHHHHHHHHHHH----------HHHHHHHHHH-------HHHHHHHH-------E----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B--BB--BB--B---B----B-----B--BBB-BB--BBBBBB--BBBBBB--BB-B-B----BB--B--BBBBB-BBBB--BB-BB---B--BB--BB--B-- : Jnet_25
Jnet_5          : -----B---B---B---B--------------B--BB---B------BB-BBB-------------------B--BB---B---B---B---B--BB--------- : Jnet_5
Jnet_0          : ----------------------------------------------------------------------------B-------B--------------------- : Jnet_0
Jnet Rel        : 8069999999999987421554677642899999885268875103244432157776421567777664358999999999999998631789999999987249 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.