SILENT_MODE
BLOCK_FILE jp_0Xm0lqf.concise.blc
MAX_NSEQ 85
MAX_INPUT_LEN 87
OUTPUT_FILE jp_0Xm0lqf.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 186 74   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 75 186 84 H SPACE
SUB_CHARS 1 75 186 84 E SPACE
SUB_CHARS 1 75 186 84 - SPACE
STRAND 2 78 10
COLOUR_TEXT_REGION 2 78 10 78 51
STRAND 33 78 35
COLOUR_TEXT_REGION 33 78 35 78 51
STRAND 40 78 44
COLOUR_TEXT_REGION 40 78 44 78 51
STRAND 67 78 75
COLOUR_TEXT_REGION 67 78 75 78 51
STRAND 103 78 112
COLOUR_TEXT_REGION 103 78 112 78 51
STRAND 142 78 146
COLOUR_TEXT_REGION 142 78 146 78 51
STRAND 169 78 178
COLOUR_TEXT_REGION 169 78 178 78 51
HELIX 16 78 27
COLOUR_TEXT_REGION 16 78 27 78 50
HELIX 48 78 62
COLOUR_TEXT_REGION 48 78 62 78 50
HELIX 119 78 131
COLOUR_TEXT_REGION 119 78 131 78 50
HELIX 149 78 163
COLOUR_TEXT_REGION 149 78 163 78 50
STRAND 3 83 10
COLOUR_TEXT_REGION 3 83 10 83 51
STRAND 33 83 35
COLOUR_TEXT_REGION 33 83 35 83 51
STRAND 40 83 44
COLOUR_TEXT_REGION 40 83 44 83 51
STRAND 67 83 75
COLOUR_TEXT_REGION 67 83 75 83 51
STRAND 104 83 111
COLOUR_TEXT_REGION 104 83 111 83 51
STRAND 142 83 146
COLOUR_TEXT_REGION 142 83 146 83 51
STRAND 169 83 177
COLOUR_TEXT_REGION 169 83 177 83 51
HELIX 16 83 27
COLOUR_TEXT_REGION 16 83 27 83 50
HELIX 47 83 62
COLOUR_TEXT_REGION 47 83 62 83 50
HELIX 119 83 131
COLOUR_TEXT_REGION 119 83 131 83 50
HELIX 149 83 163
COLOUR_TEXT_REGION 149 83 163 83 50
STRAND 2 84 11
COLOUR_TEXT_REGION 2 84 11 84 51
STRAND 33 84 36
COLOUR_TEXT_REGION 33 84 36 84 51
STRAND 39 84 44
COLOUR_TEXT_REGION 39 84 44 84 51
STRAND 67 84 75
COLOUR_TEXT_REGION 67 84 75 84 51
STRAND 102 84 112
COLOUR_TEXT_REGION 102 84 112 84 51
STRAND 141 84 145
COLOUR_TEXT_REGION 141 84 145 84 51
STRAND 169 84 178
COLOUR_TEXT_REGION 169 84 178 84 51
HELIX 16 84 27
COLOUR_TEXT_REGION 16 84 27 84 50
HELIX 48 84 61
COLOUR_TEXT_REGION 48 84 61 84 50
HELIX 118 84 131
COLOUR_TEXT_REGION 118 84 131 84 50
HELIX 149 84 163
COLOUR_TEXT_REGION 149 84 163 84 50