SILENT_MODE BLOCK_FILE jp_GtFUkqU.concise.blc MAX_NSEQ 456 MAX_INPUT_LEN 458 OUTPUT_FILE jp_GtFUkqU.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 114 445 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 446 114 455 H SPACE SUB_CHARS 1 446 114 455 E SPACE SUB_CHARS 1 446 114 455 - SPACE STRAND 3 449 5 COLOUR_TEXT_REGION 3 449 5 449 51 STRAND 8 449 12 COLOUR_TEXT_REGION 8 449 12 449 51 STRAND 103 449 104 COLOUR_TEXT_REGION 103 449 104 449 51 HELIX 26 449 36 COLOUR_TEXT_REGION 26 449 36 449 50 HELIX 47 449 62 COLOUR_TEXT_REGION 47 449 62 449 50 HELIX 69 449 79 COLOUR_TEXT_REGION 69 449 79 449 50 HELIX 86 449 92 COLOUR_TEXT_REGION 86 449 92 449 50 HELIX 97 449 102 COLOUR_TEXT_REGION 97 449 102 449 50 STRAND 3 454 5 COLOUR_TEXT_REGION 3 454 5 454 51 STRAND 9 454 12 COLOUR_TEXT_REGION 9 454 12 454 51 STRAND 103 454 105 COLOUR_TEXT_REGION 103 454 105 454 51 HELIX 26 454 35 COLOUR_TEXT_REGION 26 454 35 454 50 HELIX 47 454 62 COLOUR_TEXT_REGION 47 454 62 454 50 HELIX 69 454 78 COLOUR_TEXT_REGION 69 454 78 454 50 HELIX 86 454 91 COLOUR_TEXT_REGION 86 454 91 454 50 HELIX 97 454 102 COLOUR_TEXT_REGION 97 454 102 454 50 STRAND 3 455 5 COLOUR_TEXT_REGION 3 455 5 455 51 STRAND 8 455 12 COLOUR_TEXT_REGION 8 455 12 455 51 HELIX 26 455 38 COLOUR_TEXT_REGION 26 455 38 455 50 HELIX 47 455 62 COLOUR_TEXT_REGION 47 455 62 455 50 HELIX 68 455 79 COLOUR_TEXT_REGION 68 455 79 455 50 HELIX 86 455 92 COLOUR_TEXT_REGION 86 455 92 455 50 HELIX 98 455 103 COLOUR_TEXT_REGION 98 455 103 455 50