SILENT_MODE
BLOCK_FILE jp_qnMzA8g.concise.blc
MAX_NSEQ 111
MAX_INPUT_LEN 113
OUTPUT_FILE jp_qnMzA8g.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 106 100   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 101 106 110 H SPACE
SUB_CHARS 1 101 106 110 E SPACE
SUB_CHARS 1 101 106 110 - SPACE
STRAND 14 104 19
COLOUR_TEXT_REGION 14 104 19 104 51
STRAND 22 104 29
COLOUR_TEXT_REGION 22 104 29 104 51
STRAND 33 104 35
COLOUR_TEXT_REGION 33 104 35 104 51
HELIX 36 104 44
COLOUR_TEXT_REGION 36 104 44 104 50
HELIX 50 104 59
COLOUR_TEXT_REGION 50 104 59 104 50
HELIX 69 104 77
COLOUR_TEXT_REGION 69 104 77 104 50
HELIX 93 104 103
COLOUR_TEXT_REGION 93 104 103 104 50
STRAND 14 109 19
COLOUR_TEXT_REGION 14 109 19 109 51
STRAND 22 109 29
COLOUR_TEXT_REGION 22 109 29 109 51
STRAND 33 109 35
COLOUR_TEXT_REGION 33 109 35 109 51
HELIX 37 109 44
COLOUR_TEXT_REGION 37 109 44 109 50
HELIX 50 109 59
COLOUR_TEXT_REGION 50 109 59 109 50
HELIX 69 109 77
COLOUR_TEXT_REGION 69 109 77 109 50
HELIX 93 109 103
COLOUR_TEXT_REGION 93 109 103 109 50
STRAND 14 110 29
COLOUR_TEXT_REGION 14 110 29 110 51
STRAND 33 110 35
COLOUR_TEXT_REGION 33 110 35 110 51
STRAND 61 110 65
COLOUR_TEXT_REGION 61 110 65 110 51
HELIX 36 110 44
COLOUR_TEXT_REGION 36 110 44 110 50
HELIX 50 110 59
COLOUR_TEXT_REGION 50 110 59 110 50
HELIX 69 110 77
COLOUR_TEXT_REGION 69 110 77 110 50
HELIX 93 110 104
COLOUR_TEXT_REGION 93 110 104 110 50