SILENT_MODE
BLOCK_FILE jp_v6oYXmP.concise.blc
MAX_NSEQ 301
MAX_INPUT_LEN 303
OUTPUT_FILE jp_v6oYXmP.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 213 290   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 291 213 300 H SPACE
SUB_CHARS 1 291 213 300 E SPACE
SUB_CHARS 1 291 213 300 - SPACE
STRAND 148 294 153
COLOUR_TEXT_REGION 148 294 153 294 51
HELIX 5 294 27
COLOUR_TEXT_REGION 5 294 27 294 50
HELIX 33 294 45
COLOUR_TEXT_REGION 33 294 45 294 50
HELIX 52 294 52
COLOUR_TEXT_REGION 52 294 52 294 50
HELIX 62 294 73
COLOUR_TEXT_REGION 62 294 73 294 50
HELIX 83 294 99
COLOUR_TEXT_REGION 83 294 99 294 50
HELIX 103 294 121
COLOUR_TEXT_REGION 103 294 121 294 50
HELIX 128 294 142
COLOUR_TEXT_REGION 128 294 142 294 50
HELIX 162 294 183
COLOUR_TEXT_REGION 162 294 183 294 50
HELIX 189 294 208
COLOUR_TEXT_REGION 189 294 208 294 50
STRAND 148 299 152
COLOUR_TEXT_REGION 148 299 152 299 51
STRAND 188 299 191
COLOUR_TEXT_REGION 188 299 191 299 51
HELIX 5 299 27
COLOUR_TEXT_REGION 5 299 27 299 50
HELIX 33 299 45
COLOUR_TEXT_REGION 33 299 45 299 50
HELIX 62 299 73
COLOUR_TEXT_REGION 62 299 73 299 50
HELIX 83 299 99
COLOUR_TEXT_REGION 83 299 99 299 50
HELIX 103 299 121
COLOUR_TEXT_REGION 103 299 121 299 50
HELIX 128 299 142
COLOUR_TEXT_REGION 128 299 142 299 50
HELIX 162 299 183
COLOUR_TEXT_REGION 162 299 183 299 50
HELIX 192 299 208
COLOUR_TEXT_REGION 192 299 208 299 50
STRAND 148 300 155
COLOUR_TEXT_REGION 148 300 155 300 51
HELIX 5 300 27
COLOUR_TEXT_REGION 5 300 27 300 50
HELIX 33 300 45
COLOUR_TEXT_REGION 33 300 45 300 50
HELIX 52 300 55
COLOUR_TEXT_REGION 52 300 55 300 50
HELIX 62 300 73
COLOUR_TEXT_REGION 62 300 73 300 50
HELIX 83 300 99
COLOUR_TEXT_REGION 83 300 99 300 50
HELIX 103 300 121
COLOUR_TEXT_REGION 103 300 121 300 50
HELIX 128 300 142
COLOUR_TEXT_REGION 128 300 142 300 50
HELIX 161 300 184
COLOUR_TEXT_REGION 161 300 184 300 50
HELIX 188 300 208
COLOUR_TEXT_REGION 188 300 208 300 50