SILENT_MODE
BLOCK_FILE jp_e48tIqG.concise.blc
MAX_NSEQ 60
MAX_INPUT_LEN 62
OUTPUT_FILE jp_e48tIqG.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 112 49   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 50 112 59 H SPACE
SUB_CHARS 1 50 112 59 E SPACE
SUB_CHARS 1 50 112 59 - SPACE
HELIX 2 53 20
COLOUR_TEXT_REGION 2 53 20 53 50
HELIX 29 53 34
COLOUR_TEXT_REGION 29 53 34 53 50
HELIX 39 53 62
COLOUR_TEXT_REGION 39 53 62 53 50
HELIX 69 53 76
COLOUR_TEXT_REGION 69 53 76 53 50
HELIX 84 53 93
COLOUR_TEXT_REGION 84 53 93 53 50
HELIX 98 53 110
COLOUR_TEXT_REGION 98 53 110 53 50
STRAND 30 58 34
COLOUR_TEXT_REGION 30 58 34 58 51
STRAND 66 58 67
COLOUR_TEXT_REGION 66 58 67 58 51
HELIX 2 58 20
COLOUR_TEXT_REGION 2 58 20 58 50
HELIX 39 58 62
COLOUR_TEXT_REGION 39 58 62 58 50
HELIX 69 58 76
COLOUR_TEXT_REGION 69 58 76 58 50
HELIX 84 58 93
COLOUR_TEXT_REGION 84 58 93 58 50
HELIX 98 58 110
COLOUR_TEXT_REGION 98 58 110 58 50
HELIX 3 59 20
COLOUR_TEXT_REGION 3 59 20 59 50
HELIX 28 59 34
COLOUR_TEXT_REGION 28 59 34 59 50
HELIX 39 59 62
COLOUR_TEXT_REGION 39 59 62 59 50
HELIX 68 59 76
COLOUR_TEXT_REGION 68 59 76 59 50
HELIX 84 59 93
COLOUR_TEXT_REGION 84 59 93 59 50
HELIX 99 59 110
COLOUR_TEXT_REGION 99 59 110 59 50