SILENT_MODE BLOCK_FILE jp_Ba_lUtt.concise.blc MAX_NSEQ 117 MAX_INPUT_LEN 119 OUTPUT_FILE jp_Ba_lUtt.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 118 106 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 107 118 116 H SPACE SUB_CHARS 1 107 118 116 E SPACE SUB_CHARS 1 107 118 116 - SPACE STRAND 74 110 79 COLOUR_TEXT_REGION 74 110 79 110 51 STRAND 84 110 99 COLOUR_TEXT_REGION 84 110 99 110 51 STRAND 105 110 112 COLOUR_TEXT_REGION 105 110 112 110 51 HELIX 9 110 20 COLOUR_TEXT_REGION 9 110 20 110 50 HELIX 24 110 43 COLOUR_TEXT_REGION 24 110 43 110 50 HELIX 49 110 63 COLOUR_TEXT_REGION 49 110 63 110 50 STRAND 75 115 79 COLOUR_TEXT_REGION 75 115 79 115 51 STRAND 84 115 90 COLOUR_TEXT_REGION 84 115 90 115 51 STRAND 93 115 94 COLOUR_TEXT_REGION 93 115 94 115 51 STRAND 97 115 99 COLOUR_TEXT_REGION 97 115 99 115 51 STRAND 105 115 111 COLOUR_TEXT_REGION 105 115 111 115 51 HELIX 9 115 10 COLOUR_TEXT_REGION 9 115 10 115 50 HELIX 13 115 21 COLOUR_TEXT_REGION 13 115 21 115 50 HELIX 24 115 43 COLOUR_TEXT_REGION 24 115 43 115 50 HELIX 49 115 62 COLOUR_TEXT_REGION 49 115 62 115 50 STRAND 74 116 79 COLOUR_TEXT_REGION 74 116 79 116 51 STRAND 84 116 99 COLOUR_TEXT_REGION 84 116 99 116 51 STRAND 105 116 113 COLOUR_TEXT_REGION 105 116 113 116 51 HELIX 8 116 19 COLOUR_TEXT_REGION 8 116 19 116 50 HELIX 24 116 43 COLOUR_TEXT_REGION 24 116 43 116 50 HELIX 49 116 63 COLOUR_TEXT_REGION 49 116 63 116 50