SILENT_MODE BLOCK_FILE jp_8oxegOY.concise.blc MAX_NSEQ 886 MAX_INPUT_LEN 888 OUTPUT_FILE jp_8oxegOY.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 249 875 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 876 249 885 H SPACE SUB_CHARS 1 876 249 885 E SPACE SUB_CHARS 1 876 249 885 - SPACE STRAND 4 879 9 COLOUR_TEXT_REGION 4 879 9 879 51 STRAND 14 879 19 COLOUR_TEXT_REGION 14 879 19 879 51 STRAND 49 879 55 COLOUR_TEXT_REGION 49 879 55 879 51 STRAND 60 879 64 COLOUR_TEXT_REGION 60 879 64 879 51 STRAND 99 879 103 COLOUR_TEXT_REGION 99 879 103 879 51 STRAND 120 879 123 COLOUR_TEXT_REGION 120 879 123 879 51 STRAND 128 879 132 COLOUR_TEXT_REGION 128 879 132 879 51 STRAND 137 879 141 COLOUR_TEXT_REGION 137 879 141 879 51 HELIX 29 879 44 COLOUR_TEXT_REGION 29 879 44 879 50 HELIX 67 879 70 COLOUR_TEXT_REGION 67 879 70 879 50 HELIX 76 879 94 COLOUR_TEXT_REGION 76 879 94 879 50 HELIX 106 879 117 COLOUR_TEXT_REGION 106 879 117 879 50 HELIX 146 879 154 COLOUR_TEXT_REGION 146 879 154 879 50 HELIX 156 879 165 COLOUR_TEXT_REGION 156 879 165 879 50 HELIX 171 879 176 COLOUR_TEXT_REGION 171 879 176 879 50 HELIX 188 879 201 COLOUR_TEXT_REGION 188 879 201 879 50 HELIX 205 879 219 COLOUR_TEXT_REGION 205 879 219 879 50 HELIX 223 879 238 COLOUR_TEXT_REGION 223 879 238 879 50 HELIX 241 879 247 COLOUR_TEXT_REGION 241 879 247 879 50 STRAND 3 884 10 COLOUR_TEXT_REGION 3 884 10 884 51 STRAND 14 884 19 COLOUR_TEXT_REGION 14 884 19 884 51 STRAND 49 884 55 COLOUR_TEXT_REGION 49 884 55 884 51 STRAND 60 884 65 COLOUR_TEXT_REGION 60 884 65 884 51 STRAND 99 884 103 COLOUR_TEXT_REGION 99 884 103 884 51 STRAND 120 884 123 COLOUR_TEXT_REGION 120 884 123 884 51 STRAND 128 884 132 COLOUR_TEXT_REGION 128 884 132 884 51 STRAND 138 884 141 COLOUR_TEXT_REGION 138 884 141 884 51 HELIX 29 884 44 COLOUR_TEXT_REGION 29 884 44 884 50 HELIX 67 884 70 COLOUR_TEXT_REGION 67 884 70 884 50 HELIX 77 884 94 COLOUR_TEXT_REGION 77 884 94 884 50 HELIX 106 884 117 COLOUR_TEXT_REGION 106 884 117 884 50 HELIX 146 884 154 COLOUR_TEXT_REGION 146 884 154 884 50 HELIX 156 884 165 COLOUR_TEXT_REGION 156 884 165 884 50 HELIX 171 884 177 COLOUR_TEXT_REGION 171 884 177 884 50 HELIX 188 884 201 COLOUR_TEXT_REGION 188 884 201 884 50 HELIX 205 884 219 COLOUR_TEXT_REGION 205 884 219 884 50 HELIX 223 884 238 COLOUR_TEXT_REGION 223 884 238 884 50 HELIX 243 884 247 COLOUR_TEXT_REGION 243 884 247 884 50 STRAND 4 885 9 COLOUR_TEXT_REGION 4 885 9 885 51 STRAND 14 885 19 COLOUR_TEXT_REGION 14 885 19 885 51 STRAND 49 885 55 COLOUR_TEXT_REGION 49 885 55 885 51 STRAND 60 885 63 COLOUR_TEXT_REGION 60 885 63 885 51 STRAND 99 885 103 COLOUR_TEXT_REGION 99 885 103 885 51 STRAND 120 885 124 COLOUR_TEXT_REGION 120 885 124 885 51 STRAND 128 885 132 COLOUR_TEXT_REGION 128 885 132 885 51 STRAND 136 885 141 COLOUR_TEXT_REGION 136 885 141 885 51 HELIX 29 885 44 COLOUR_TEXT_REGION 29 885 44 885 50 HELIX 67 885 71 COLOUR_TEXT_REGION 67 885 71 885 50 HELIX 76 885 94 COLOUR_TEXT_REGION 76 885 94 885 50 HELIX 106 885 117 COLOUR_TEXT_REGION 106 885 117 885 50 HELIX 146 885 153 COLOUR_TEXT_REGION 146 885 153 885 50 HELIX 156 885 165 COLOUR_TEXT_REGION 156 885 165 885 50 HELIX 171 885 176 COLOUR_TEXT_REGION 171 885 176 885 50 HELIX 187 885 201 COLOUR_TEXT_REGION 187 885 201 885 50 HELIX 205 885 220 COLOUR_TEXT_REGION 205 885 220 885 50 HELIX 223 885 238 COLOUR_TEXT_REGION 223 885 238 885 50 HELIX 240 885 247 COLOUR_TEXT_REGION 240 885 247 885 50