SILENT_MODE
BLOCK_FILE jp_YYBtjkc.concise.blc
MAX_NSEQ 84
MAX_INPUT_LEN 86
OUTPUT_FILE jp_YYBtjkc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 167 73   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 74 167 83 H SPACE
SUB_CHARS 1 74 167 83 E SPACE
SUB_CHARS 1 74 167 83 - SPACE
HELIX 3 77 24
COLOUR_TEXT_REGION 3 77 24 77 50
HELIX 39 77 72
COLOUR_TEXT_REGION 39 77 72 77 50
HELIX 84 77 95
COLOUR_TEXT_REGION 84 77 95 77 50
HELIX 98 77 108
COLOUR_TEXT_REGION 98 77 108 77 50
HELIX 118 77 139
COLOUR_TEXT_REGION 118 77 139 77 50
HELIX 147 77 165
COLOUR_TEXT_REGION 147 77 165 77 50
HELIX 3 82 24
COLOUR_TEXT_REGION 3 82 24 82 50
HELIX 39 82 73
COLOUR_TEXT_REGION 39 82 73 82 50
HELIX 83 82 95
COLOUR_TEXT_REGION 83 82 95 82 50
HELIX 97 82 107
COLOUR_TEXT_REGION 97 82 107 82 50
HELIX 118 82 139
COLOUR_TEXT_REGION 118 82 139 82 50
HELIX 147 82 165
COLOUR_TEXT_REGION 147 82 165 82 50
STRAND 72 83 72
COLOUR_TEXT_REGION 72 83 72 83 51
HELIX 4 83 24
COLOUR_TEXT_REGION 4 83 24 83 50
HELIX 38 83 71
COLOUR_TEXT_REGION 38 83 71 83 50
HELIX 89 83 94
COLOUR_TEXT_REGION 89 83 94 83 50
HELIX 100 83 110
COLOUR_TEXT_REGION 100 83 110 83 50
HELIX 118 83 138
COLOUR_TEXT_REGION 118 83 138 83 50
HELIX 148 83 165
COLOUR_TEXT_REGION 148 83 165 83 50