SILENT_MODE BLOCK_FILE jp_jHkyBGb.concise.blc MAX_NSEQ 170 MAX_INPUT_LEN 172 OUTPUT_FILE jp_jHkyBGb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 131 159 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 160 131 169 H SPACE SUB_CHARS 1 160 131 169 E SPACE SUB_CHARS 1 160 131 169 - SPACE STRAND 12 163 18 COLOUR_TEXT_REGION 12 163 18 163 51 STRAND 28 163 33 COLOUR_TEXT_REGION 28 163 33 163 51 STRAND 35 163 39 COLOUR_TEXT_REGION 35 163 39 163 51 STRAND 45 163 45 COLOUR_TEXT_REGION 45 163 45 163 51 STRAND 49 163 54 COLOUR_TEXT_REGION 49 163 54 163 51 STRAND 62 163 65 COLOUR_TEXT_REGION 62 163 65 163 51 STRAND 73 163 75 COLOUR_TEXT_REGION 73 163 75 163 51 STRAND 84 163 89 COLOUR_TEXT_REGION 84 163 89 163 51 STRAND 103 163 108 COLOUR_TEXT_REGION 103 163 108 163 51 STRAND 113 163 119 COLOUR_TEXT_REGION 113 163 119 163 51 HELIX 125 163 125 COLOUR_TEXT_REGION 125 163 125 163 50 HELIX 127 163 128 COLOUR_TEXT_REGION 127 163 128 163 50 STRAND 12 168 17 COLOUR_TEXT_REGION 12 168 17 168 51 STRAND 28 168 33 COLOUR_TEXT_REGION 28 168 33 168 51 STRAND 36 168 39 COLOUR_TEXT_REGION 36 168 39 168 51 STRAND 49 168 54 COLOUR_TEXT_REGION 49 168 54 168 51 STRAND 62 168 65 COLOUR_TEXT_REGION 62 168 65 168 51 STRAND 73 168 75 COLOUR_TEXT_REGION 73 168 75 168 51 STRAND 84 168 89 COLOUR_TEXT_REGION 84 168 89 168 51 STRAND 103 168 108 COLOUR_TEXT_REGION 103 168 108 168 51 STRAND 113 168 119 COLOUR_TEXT_REGION 113 168 119 168 51 HELIX 125 168 125 COLOUR_TEXT_REGION 125 168 125 168 50 HELIX 127 168 128 COLOUR_TEXT_REGION 127 168 128 168 50 STRAND 12 169 18 COLOUR_TEXT_REGION 12 169 18 169 51 STRAND 27 169 38 COLOUR_TEXT_REGION 27 169 38 169 51 STRAND 44 169 46 COLOUR_TEXT_REGION 44 169 46 169 51 STRAND 51 169 53 COLOUR_TEXT_REGION 51 169 53 169 51 STRAND 62 169 66 COLOUR_TEXT_REGION 62 169 66 169 51 STRAND 72 169 74 COLOUR_TEXT_REGION 72 169 74 169 51 STRAND 84 169 90 COLOUR_TEXT_REGION 84 169 90 169 51 STRAND 103 169 108 COLOUR_TEXT_REGION 103 169 108 169 51 STRAND 113 169 119 COLOUR_TEXT_REGION 113 169 119 169 51 HELIX 125 169 125 COLOUR_TEXT_REGION 125 169 125 169 50 HELIX 127 169 128 COLOUR_TEXT_REGION 127 169 128 169 50