SILENT_MODE BLOCK_FILE jp_yKBQPP2.concise.blc MAX_NSEQ 105 MAX_INPUT_LEN 107 OUTPUT_FILE jp_yKBQPP2.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 302 94 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 95 302 104 H SPACE SUB_CHARS 1 95 302 104 E SPACE SUB_CHARS 1 95 302 104 - SPACE STRAND 11 98 15 COLOUR_TEXT_REGION 11 98 15 98 51 STRAND 19 98 26 COLOUR_TEXT_REGION 19 98 26 98 51 STRAND 30 98 35 COLOUR_TEXT_REGION 30 98 35 98 51 STRAND 40 98 51 COLOUR_TEXT_REGION 40 98 51 98 51 STRAND 56 98 65 COLOUR_TEXT_REGION 56 98 65 98 51 STRAND 67 98 72 COLOUR_TEXT_REGION 67 98 72 98 51 STRAND 90 98 94 COLOUR_TEXT_REGION 90 98 94 98 51 STRAND 111 98 121 COLOUR_TEXT_REGION 111 98 121 98 51 STRAND 127 98 133 COLOUR_TEXT_REGION 127 98 133 98 51 STRAND 137 98 146 COLOUR_TEXT_REGION 137 98 146 98 51 STRAND 159 98 167 COLOUR_TEXT_REGION 159 98 167 98 51 STRAND 172 98 176 COLOUR_TEXT_REGION 172 98 176 98 51 STRAND 181 98 188 COLOUR_TEXT_REGION 181 98 188 98 51 STRAND 197 98 202 COLOUR_TEXT_REGION 197 98 202 98 51 STRAND 239 98 244 COLOUR_TEXT_REGION 239 98 244 98 51 STRAND 251 98 256 COLOUR_TEXT_REGION 251 98 256 98 51 STRAND 272 98 277 COLOUR_TEXT_REGION 272 98 277 98 51 STRAND 281 98 294 COLOUR_TEXT_REGION 281 98 294 98 51 STRAND 297 98 300 COLOUR_TEXT_REGION 297 98 300 98 51 HELIX 217 98 221 COLOUR_TEXT_REGION 217 98 221 98 50 HELIX 261 98 268 COLOUR_TEXT_REGION 261 98 268 98 50 STRAND 11 103 15 COLOUR_TEXT_REGION 11 103 15 103 51 STRAND 19 103 26 COLOUR_TEXT_REGION 19 103 26 103 51 STRAND 30 103 35 COLOUR_TEXT_REGION 30 103 35 103 51 STRAND 40 103 51 COLOUR_TEXT_REGION 40 103 51 103 51 STRAND 57 103 65 COLOUR_TEXT_REGION 57 103 65 103 51 STRAND 67 103 72 COLOUR_TEXT_REGION 67 103 72 103 51 STRAND 90 103 94 COLOUR_TEXT_REGION 90 103 94 103 51 STRAND 111 103 121 COLOUR_TEXT_REGION 111 103 121 103 51 STRAND 127 103 133 COLOUR_TEXT_REGION 127 103 133 103 51 STRAND 137 103 146 COLOUR_TEXT_REGION 137 103 146 103 51 STRAND 159 103 166 COLOUR_TEXT_REGION 159 103 166 103 51 STRAND 172 103 176 COLOUR_TEXT_REGION 172 103 176 103 51 STRAND 181 103 187 COLOUR_TEXT_REGION 181 103 187 103 51 STRAND 197 103 202 COLOUR_TEXT_REGION 197 103 202 103 51 STRAND 239 103 243 COLOUR_TEXT_REGION 239 103 243 103 51 STRAND 251 103 256 COLOUR_TEXT_REGION 251 103 256 103 51 STRAND 273 103 277 COLOUR_TEXT_REGION 273 103 277 103 51 STRAND 281 103 284 COLOUR_TEXT_REGION 281 103 284 103 51 STRAND 287 103 294 COLOUR_TEXT_REGION 287 103 294 103 51 STRAND 297 103 301 COLOUR_TEXT_REGION 297 103 301 103 51 HELIX 54 103 56 COLOUR_TEXT_REGION 54 103 56 103 50 HELIX 217 103 221 COLOUR_TEXT_REGION 217 103 221 103 50 HELIX 262 103 267 COLOUR_TEXT_REGION 262 103 267 103 50 STRAND 11 104 14 COLOUR_TEXT_REGION 11 104 14 104 51 STRAND 20 104 26 COLOUR_TEXT_REGION 20 104 26 104 51 STRAND 30 104 35 COLOUR_TEXT_REGION 30 104 35 104 51 STRAND 39 104 50 COLOUR_TEXT_REGION 39 104 50 104 51 STRAND 56 104 65 COLOUR_TEXT_REGION 56 104 65 104 51 STRAND 68 104 71 COLOUR_TEXT_REGION 68 104 71 104 51 STRAND 91 104 94 COLOUR_TEXT_REGION 91 104 94 104 51 STRAND 107 104 107 COLOUR_TEXT_REGION 107 104 107 104 51 STRAND 113 104 121 COLOUR_TEXT_REGION 113 104 121 104 51 STRAND 127 104 133 COLOUR_TEXT_REGION 127 104 133 104 51 STRAND 138 104 145 COLOUR_TEXT_REGION 138 104 145 104 51 STRAND 159 104 167 COLOUR_TEXT_REGION 159 104 167 104 51 STRAND 172 104 176 COLOUR_TEXT_REGION 172 104 176 104 51 STRAND 181 104 188 COLOUR_TEXT_REGION 181 104 188 104 51 STRAND 197 104 203 COLOUR_TEXT_REGION 197 104 203 104 51 STRAND 239 104 244 COLOUR_TEXT_REGION 239 104 244 104 51 STRAND 250 104 256 COLOUR_TEXT_REGION 250 104 256 104 51 STRAND 272 104 277 COLOUR_TEXT_REGION 272 104 277 104 51 STRAND 281 104 294 COLOUR_TEXT_REGION 281 104 294 104 51 STRAND 297 104 300 COLOUR_TEXT_REGION 297 104 300 104 51 HELIX 83 104 85 COLOUR_TEXT_REGION 83 104 85 104 50 HELIX 217 104 220 COLOUR_TEXT_REGION 217 104 220 104 50 HELIX 261 104 268 COLOUR_TEXT_REGION 261 104 268 104 50