SILENT_MODE BLOCK_FILE jp_nLNgUXA.concise.blc MAX_NSEQ 495 MAX_INPUT_LEN 497 OUTPUT_FILE jp_nLNgUXA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 159 484 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 485 159 494 H SPACE SUB_CHARS 1 485 159 494 E SPACE SUB_CHARS 1 485 159 494 - SPACE STRAND 82 488 83 COLOUR_TEXT_REGION 82 488 83 488 51 STRAND 90 488 95 COLOUR_TEXT_REGION 90 488 95 488 51 STRAND 103 488 105 COLOUR_TEXT_REGION 103 488 105 488 51 STRAND 132 488 141 COLOUR_TEXT_REGION 132 488 141 488 51 STRAND 149 488 157 COLOUR_TEXT_REGION 149 488 157 488 51 HELIX 3 488 21 COLOUR_TEXT_REGION 3 488 21 488 50 HELIX 25 488 36 COLOUR_TEXT_REGION 25 488 36 488 50 HELIX 40 488 50 COLOUR_TEXT_REGION 40 488 50 488 50 HELIX 58 488 75 COLOUR_TEXT_REGION 58 488 75 488 50 HELIX 117 488 128 COLOUR_TEXT_REGION 117 488 128 488 50 STRAND 82 493 83 COLOUR_TEXT_REGION 82 493 83 493 51 STRAND 90 493 95 COLOUR_TEXT_REGION 90 493 95 493 51 STRAND 103 493 105 COLOUR_TEXT_REGION 103 493 105 493 51 STRAND 133 493 141 COLOUR_TEXT_REGION 133 493 141 493 51 STRAND 149 493 157 COLOUR_TEXT_REGION 149 493 157 493 51 HELIX 2 493 21 COLOUR_TEXT_REGION 2 493 21 493 50 HELIX 25 493 37 COLOUR_TEXT_REGION 25 493 37 493 50 HELIX 39 493 49 COLOUR_TEXT_REGION 39 493 49 493 50 HELIX 59 493 75 COLOUR_TEXT_REGION 59 493 75 493 50 HELIX 117 493 128 COLOUR_TEXT_REGION 117 493 128 493 50 STRAND 90 494 95 COLOUR_TEXT_REGION 90 494 95 494 51 STRAND 103 494 106 COLOUR_TEXT_REGION 103 494 106 494 51 STRAND 132 494 142 COLOUR_TEXT_REGION 132 494 142 494 51 STRAND 149 494 156 COLOUR_TEXT_REGION 149 494 156 494 51 HELIX 3 494 21 COLOUR_TEXT_REGION 3 494 21 494 50 HELIX 25 494 34 COLOUR_TEXT_REGION 25 494 34 494 50 HELIX 41 494 50 COLOUR_TEXT_REGION 41 494 50 494 50 HELIX 56 494 74 COLOUR_TEXT_REGION 56 494 74 494 50 HELIX 116 494 127 COLOUR_TEXT_REGION 116 494 127 494 50