SILENT_MODE
BLOCK_FILE jp_GHr349U.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_GHr349U.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 147 17   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 18 147 27 H SPACE
SUB_CHARS 1 18 147 27 E SPACE
SUB_CHARS 1 18 147 27 - SPACE
STRAND 65 21 65
COLOUR_TEXT_REGION 65 21 65 21 51
STRAND 137 21 139
COLOUR_TEXT_REGION 137 21 139 21 51
HELIX 5 21 13
COLOUR_TEXT_REGION 5 21 13 21 50
HELIX 19 21 30
COLOUR_TEXT_REGION 19 21 30 21 50
HELIX 43 21 56
COLOUR_TEXT_REGION 43 21 56 21 50
HELIX 87 21 96
COLOUR_TEXT_REGION 87 21 96 21 50
HELIX 103 21 111
COLOUR_TEXT_REGION 103 21 111 21 50
HELIX 121 21 131
COLOUR_TEXT_REGION 121 21 131 21 50
HELIX 142 21 144
COLOUR_TEXT_REGION 142 21 144 21 50
STRAND 136 26 139
COLOUR_TEXT_REGION 136 26 139 26 51
HELIX 4 26 13
COLOUR_TEXT_REGION 4 26 13 26 50
HELIX 19 26 29
COLOUR_TEXT_REGION 19 26 29 26 50
HELIX 43 26 56
COLOUR_TEXT_REGION 43 26 56 26 50
HELIX 87 26 96
COLOUR_TEXT_REGION 87 26 96 26 50
HELIX 103 26 111
COLOUR_TEXT_REGION 103 26 111 26 50
HELIX 122 26 131
COLOUR_TEXT_REGION 122 26 131 26 50
HELIX 142 26 143
COLOUR_TEXT_REGION 142 26 143 26 50
STRAND 64 27 65
COLOUR_TEXT_REGION 64 27 65 27 51
STRAND 72 27 75
COLOUR_TEXT_REGION 72 27 75 27 51
STRAND 137 27 140
COLOUR_TEXT_REGION 137 27 140 27 51
HELIX 5 27 13
COLOUR_TEXT_REGION 5 27 13 27 50
HELIX 18 27 30
COLOUR_TEXT_REGION 18 27 30 27 50
HELIX 42 27 55
COLOUR_TEXT_REGION 42 27 55 27 50
HELIX 86 27 96
COLOUR_TEXT_REGION 86 27 96 27 50
HELIX 102 27 110
COLOUR_TEXT_REGION 102 27 110 27 50
HELIX 120 27 131
COLOUR_TEXT_REGION 120 27 131 27 50
HELIX 141 27 144
COLOUR_TEXT_REGION 141 27 144 27 50