SILENT_MODE BLOCK_FILE jp_Z_jgQZV.concise.blc MAX_NSEQ 630 MAX_INPUT_LEN 632 OUTPUT_FILE jp_Z_jgQZV.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 382 619 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 620 382 629 H SPACE SUB_CHARS 1 620 382 629 E SPACE SUB_CHARS 1 620 382 629 - SPACE STRAND 90 623 93 COLOUR_TEXT_REGION 90 623 93 623 51 STRAND 130 623 132 COLOUR_TEXT_REGION 130 623 132 623 51 STRAND 154 623 155 COLOUR_TEXT_REGION 154 623 155 623 51 STRAND 161 623 166 COLOUR_TEXT_REGION 161 623 166 623 51 STRAND 176 623 181 COLOUR_TEXT_REGION 176 623 181 623 51 STRAND 185 623 191 COLOUR_TEXT_REGION 185 623 191 623 51 STRAND 224 623 227 COLOUR_TEXT_REGION 224 623 227 623 51 STRAND 258 623 263 COLOUR_TEXT_REGION 258 623 263 623 51 STRAND 299 623 304 COLOUR_TEXT_REGION 299 623 304 623 51 STRAND 309 623 313 COLOUR_TEXT_REGION 309 623 313 623 51 STRAND 354 623 359 COLOUR_TEXT_REGION 354 623 359 623 51 HELIX 12 623 25 COLOUR_TEXT_REGION 12 623 25 623 50 HELIX 29 623 43 COLOUR_TEXT_REGION 29 623 43 623 50 HELIX 48 623 60 COLOUR_TEXT_REGION 48 623 60 623 50 HELIX 74 623 75 COLOUR_TEXT_REGION 74 623 75 623 50 HELIX 103 623 123 COLOUR_TEXT_REGION 103 623 123 623 50 HELIX 145 623 149 COLOUR_TEXT_REGION 145 623 149 623 50 HELIX 199 623 212 COLOUR_TEXT_REGION 199 623 212 623 50 HELIX 233 623 243 COLOUR_TEXT_REGION 233 623 243 623 50 HELIX 248 623 257 COLOUR_TEXT_REGION 248 623 257 623 50 HELIX 272 623 283 COLOUR_TEXT_REGION 272 623 283 623 50 HELIX 321 623 336 COLOUR_TEXT_REGION 321 623 336 623 50 HELIX 362 623 379 COLOUR_TEXT_REGION 362 623 379 623 50 STRAND 90 628 93 COLOUR_TEXT_REGION 90 628 93 628 51 STRAND 130 628 132 COLOUR_TEXT_REGION 130 628 132 628 51 STRAND 161 628 165 COLOUR_TEXT_REGION 161 628 165 628 51 STRAND 176 628 181 COLOUR_TEXT_REGION 176 628 181 628 51 STRAND 185 628 191 COLOUR_TEXT_REGION 185 628 191 628 51 STRAND 224 628 227 COLOUR_TEXT_REGION 224 628 227 628 51 STRAND 257 628 263 COLOUR_TEXT_REGION 257 628 263 628 51 STRAND 298 628 303 COLOUR_TEXT_REGION 298 628 303 628 51 STRAND 309 628 313 COLOUR_TEXT_REGION 309 628 313 628 51 STRAND 354 628 359 COLOUR_TEXT_REGION 354 628 359 628 51 HELIX 12 628 26 COLOUR_TEXT_REGION 12 628 26 628 50 HELIX 29 628 43 COLOUR_TEXT_REGION 29 628 43 628 50 HELIX 48 628 60 COLOUR_TEXT_REGION 48 628 60 628 50 HELIX 69 628 76 COLOUR_TEXT_REGION 69 628 76 628 50 HELIX 104 628 123 COLOUR_TEXT_REGION 104 628 123 628 50 HELIX 145 628 150 COLOUR_TEXT_REGION 145 628 150 628 50 HELIX 199 628 211 COLOUR_TEXT_REGION 199 628 211 628 50 HELIX 232 628 243 COLOUR_TEXT_REGION 232 628 243 628 50 HELIX 248 628 256 COLOUR_TEXT_REGION 248 628 256 628 50 HELIX 273 628 283 COLOUR_TEXT_REGION 273 628 283 628 50 HELIX 321 628 335 COLOUR_TEXT_REGION 321 628 335 628 50 HELIX 362 628 380 COLOUR_TEXT_REGION 362 628 380 628 50 STRAND 154 629 156 COLOUR_TEXT_REGION 154 629 156 629 51 STRAND 162 629 166 COLOUR_TEXT_REGION 162 629 166 629 51 STRAND 176 629 181 COLOUR_TEXT_REGION 176 629 181 629 51 STRAND 185 629 191 COLOUR_TEXT_REGION 185 629 191 629 51 STRAND 224 629 227 COLOUR_TEXT_REGION 224 629 227 629 51 STRAND 259 629 263 COLOUR_TEXT_REGION 259 629 263 629 51 STRAND 301 629 304 COLOUR_TEXT_REGION 301 629 304 629 51 STRAND 309 629 313 COLOUR_TEXT_REGION 309 629 313 629 51 STRAND 355 629 358 COLOUR_TEXT_REGION 355 629 358 629 51 HELIX 12 629 24 COLOUR_TEXT_REGION 12 629 24 629 50 HELIX 29 629 43 COLOUR_TEXT_REGION 29 629 43 629 50 HELIX 49 629 60 COLOUR_TEXT_REGION 49 629 60 629 50 HELIX 103 629 123 COLOUR_TEXT_REGION 103 629 123 629 50 HELIX 131 629 135 COLOUR_TEXT_REGION 131 629 135 629 50 HELIX 144 629 148 COLOUR_TEXT_REGION 144 629 148 629 50 HELIX 199 629 212 COLOUR_TEXT_REGION 199 629 212 629 50 HELIX 235 629 243 COLOUR_TEXT_REGION 235 629 243 629 50 HELIX 248 629 258 COLOUR_TEXT_REGION 248 629 258 629 50 HELIX 271 629 282 COLOUR_TEXT_REGION 271 629 282 629 50 HELIX 321 629 336 COLOUR_TEXT_REGION 321 629 336 629 50 HELIX 362 629 379 COLOUR_TEXT_REGION 362 629 379 629 50