SILENT_MODE
BLOCK_FILE jp_amL44IO.concise.blc
MAX_NSEQ 1204
MAX_INPUT_LEN 1206
OUTPUT_FILE jp_amL44IO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 92 1193   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1194 92 1203 H SPACE
SUB_CHARS 1 1194 92 1203 E SPACE
SUB_CHARS 1 1194 92 1203 - SPACE
STRAND 2 1197 6
COLOUR_TEXT_REGION 2 1197 6 1197 51
STRAND 10 1197 14
COLOUR_TEXT_REGION 10 1197 14 1197 51
HELIX 20 1197 40
COLOUR_TEXT_REGION 20 1197 40 1197 50
HELIX 46 1197 90
COLOUR_TEXT_REGION 46 1197 90 1197 50
STRAND 2 1202 6
COLOUR_TEXT_REGION 2 1202 6 1202 51
STRAND 10 1202 14
COLOUR_TEXT_REGION 10 1202 14 1202 51
HELIX 20 1202 40
COLOUR_TEXT_REGION 20 1202 40 1202 50
HELIX 46 1202 67
COLOUR_TEXT_REGION 46 1202 67 1202 50
HELIX 69 1202 90
COLOUR_TEXT_REGION 69 1202 90 1202 50
STRAND 2 1203 6
COLOUR_TEXT_REGION 2 1203 6 1203 51
STRAND 10 1203 14
COLOUR_TEXT_REGION 10 1203 14 1203 51
HELIX 20 1203 40
COLOUR_TEXT_REGION 20 1203 40 1203 50
HELIX 46 1203 90
COLOUR_TEXT_REGION 46 1203 90 1203 50