SILENT_MODE
BLOCK_FILE jp_IyB1SnD.concise.blc
MAX_NSEQ 63
MAX_INPUT_LEN 65
OUTPUT_FILE jp_IyB1SnD.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 52   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 53 124 62 H SPACE
SUB_CHARS 1 53 124 62 E SPACE
SUB_CHARS 1 53 124 62 - SPACE
STRAND 5 56 7
COLOUR_TEXT_REGION 5 56 7 56 51
STRAND 49 56 53
COLOUR_TEXT_REGION 49 56 53 56 51
STRAND 56 56 60
COLOUR_TEXT_REGION 56 56 60 56 51
STRAND 66 56 74
COLOUR_TEXT_REGION 66 56 74 56 51
STRAND 81 56 86
COLOUR_TEXT_REGION 81 56 86 56 51
STRAND 112 56 115
COLOUR_TEXT_REGION 112 56 115 56 51
STRAND 120 56 123
COLOUR_TEXT_REGION 120 56 123 56 51
HELIX 15 56 36
COLOUR_TEXT_REGION 15 56 36 56 50
HELIX 97 56 111
COLOUR_TEXT_REGION 97 56 111 56 50
STRAND 5 61 8
COLOUR_TEXT_REGION 5 61 8 61 51
STRAND 49 61 53
COLOUR_TEXT_REGION 49 61 53 61 51
STRAND 56 61 60
COLOUR_TEXT_REGION 56 61 60 61 51
STRAND 66 61 74
COLOUR_TEXT_REGION 66 61 74 61 51
STRAND 81 61 86
COLOUR_TEXT_REGION 81 61 86 61 51
STRAND 111 61 115
COLOUR_TEXT_REGION 111 61 115 61 51
STRAND 120 61 123
COLOUR_TEXT_REGION 120 61 123 61 51
HELIX 16 61 36
COLOUR_TEXT_REGION 16 61 36 61 50
HELIX 41 61 43
COLOUR_TEXT_REGION 41 61 43 61 50
HELIX 95 61 110
COLOUR_TEXT_REGION 95 61 110 61 50
STRAND 5 62 7
COLOUR_TEXT_REGION 5 62 7 62 51
STRAND 48 62 52
COLOUR_TEXT_REGION 48 62 52 62 51
STRAND 56 62 61
COLOUR_TEXT_REGION 56 62 61 62 51
STRAND 66 62 73
COLOUR_TEXT_REGION 66 62 73 62 51
STRAND 80 62 86
COLOUR_TEXT_REGION 80 62 86 62 51
STRAND 113 62 115
COLOUR_TEXT_REGION 113 62 115 62 51
STRAND 120 62 123
COLOUR_TEXT_REGION 120 62 123 62 51
HELIX 15 62 37
COLOUR_TEXT_REGION 15 62 37 62 50
HELIX 98 62 112
COLOUR_TEXT_REGION 98 62 112 62 50