SILENT_MODE
BLOCK_FILE jp__ViM0jL.concise.blc
MAX_NSEQ 125
MAX_INPUT_LEN 127
OUTPUT_FILE jp__ViM0jL.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 117 114   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 115 117 124 H SPACE
SUB_CHARS 1 115 117 124 E SPACE
SUB_CHARS 1 115 117 124 - SPACE
HELIX 12 118 29
COLOUR_TEXT_REGION 12 118 29 118 50
HELIX 36 118 59
COLOUR_TEXT_REGION 36 118 59 118 50
HELIX 67 118 89
COLOUR_TEXT_REGION 67 118 89 118 50
HELIX 94 118 114
COLOUR_TEXT_REGION 94 118 114 118 50
STRAND 37 123 40
COLOUR_TEXT_REGION 37 123 40 123 51
HELIX 12 123 30
COLOUR_TEXT_REGION 12 123 30 123 50
HELIX 41 123 60
COLOUR_TEXT_REGION 41 123 60 123 50
HELIX 67 123 88
COLOUR_TEXT_REGION 67 123 88 123 50
HELIX 94 123 114
COLOUR_TEXT_REGION 94 123 114 123 50
HELIX 12 124 29
COLOUR_TEXT_REGION 12 124 29 124 50
HELIX 34 124 59
COLOUR_TEXT_REGION 34 124 59 124 50
HELIX 68 124 89
COLOUR_TEXT_REGION 68 124 89 124 50
HELIX 94 124 114
COLOUR_TEXT_REGION 94 124 114 124 50