SILENT_MODE BLOCK_FILE jp_z6NwreT.concise.blc MAX_NSEQ 105 MAX_INPUT_LEN 107 OUTPUT_FILE jp_z6NwreT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 286 94 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 95 286 104 H SPACE SUB_CHARS 1 95 286 104 E SPACE SUB_CHARS 1 95 286 104 - SPACE STRAND 172 98 178 COLOUR_TEXT_REGION 172 98 178 98 51 STRAND 182 98 187 COLOUR_TEXT_REGION 182 98 187 98 51 HELIX 3 98 31 COLOUR_TEXT_REGION 3 98 31 98 50 HELIX 36 98 52 COLOUR_TEXT_REGION 36 98 52 98 50 HELIX 56 98 67 COLOUR_TEXT_REGION 56 98 67 98 50 HELIX 74 98 97 COLOUR_TEXT_REGION 74 98 97 98 50 HELIX 104 98 112 COLOUR_TEXT_REGION 104 98 112 98 50 HELIX 117 98 132 COLOUR_TEXT_REGION 117 98 132 98 50 HELIX 138 98 146 COLOUR_TEXT_REGION 138 98 146 98 50 HELIX 154 98 165 COLOUR_TEXT_REGION 154 98 165 98 50 HELIX 200 98 214 COLOUR_TEXT_REGION 200 98 214 98 50 HELIX 219 98 235 COLOUR_TEXT_REGION 219 98 235 98 50 HELIX 244 98 261 COLOUR_TEXT_REGION 244 98 261 98 50 HELIX 269 98 282 COLOUR_TEXT_REGION 269 98 282 98 50 STRAND 172 103 179 COLOUR_TEXT_REGION 172 103 179 103 51 STRAND 182 103 187 COLOUR_TEXT_REGION 182 103 187 103 51 HELIX 3 103 32 COLOUR_TEXT_REGION 3 103 32 103 50 HELIX 34 103 34 COLOUR_TEXT_REGION 34 103 34 103 50 HELIX 36 103 52 COLOUR_TEXT_REGION 36 103 52 103 50 HELIX 56 103 67 COLOUR_TEXT_REGION 56 103 67 103 50 HELIX 74 103 97 COLOUR_TEXT_REGION 74 103 97 103 50 HELIX 104 103 112 COLOUR_TEXT_REGION 104 103 112 103 50 HELIX 116 103 132 COLOUR_TEXT_REGION 116 103 132 103 50 HELIX 138 103 146 COLOUR_TEXT_REGION 138 103 146 103 50 HELIX 153 103 165 COLOUR_TEXT_REGION 153 103 165 103 50 HELIX 200 103 214 COLOUR_TEXT_REGION 200 103 214 103 50 HELIX 219 103 235 COLOUR_TEXT_REGION 219 103 235 103 50 HELIX 244 103 261 COLOUR_TEXT_REGION 244 103 261 103 50 HELIX 269 103 282 COLOUR_TEXT_REGION 269 103 282 103 50 STRAND 171 104 177 COLOUR_TEXT_REGION 171 104 177 104 51 STRAND 183 104 186 COLOUR_TEXT_REGION 183 104 186 104 51 STRAND 191 104 191 COLOUR_TEXT_REGION 191 104 191 104 51 HELIX 3 104 14 COLOUR_TEXT_REGION 3 104 14 104 50 HELIX 18 104 29 COLOUR_TEXT_REGION 18 104 29 104 50 HELIX 37 104 67 COLOUR_TEXT_REGION 37 104 67 104 50 HELIX 74 104 98 COLOUR_TEXT_REGION 74 104 98 104 50 HELIX 104 104 111 COLOUR_TEXT_REGION 104 104 111 104 50 HELIX 118 104 131 COLOUR_TEXT_REGION 118 104 131 104 50 HELIX 137 104 145 COLOUR_TEXT_REGION 137 104 145 104 50 HELIX 155 104 164 COLOUR_TEXT_REGION 155 104 164 104 50 HELIX 200 104 214 COLOUR_TEXT_REGION 200 104 214 104 50 HELIX 219 104 235 COLOUR_TEXT_REGION 219 104 235 104 50 HELIX 244 104 260 COLOUR_TEXT_REGION 244 104 260 104 50 HELIX 270 104 282 COLOUR_TEXT_REGION 270 104 282 104 50