SILENT_MODE
BLOCK_FILE jp_01X0Tj1.concise.blc
MAX_NSEQ 768
MAX_INPUT_LEN 770
OUTPUT_FILE jp_01X0Tj1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 122 757   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 758 122 767 H SPACE
SUB_CHARS 1 758 122 767 E SPACE
SUB_CHARS 1 758 122 767 - SPACE
STRAND 24 761 27
COLOUR_TEXT_REGION 24 761 27 761 51
STRAND 32 761 34
COLOUR_TEXT_REGION 32 761 34 761 51
STRAND 79 761 82
COLOUR_TEXT_REGION 79 761 82 761 51
STRAND 86 761 91
COLOUR_TEXT_REGION 86 761 91 761 51
HELIX 5 761 17
COLOUR_TEXT_REGION 5 761 17 761 50
HELIX 37 761 47
COLOUR_TEXT_REGION 37 761 47 761 50
HELIX 58 761 75
COLOUR_TEXT_REGION 58 761 75 761 50
HELIX 105 761 114
COLOUR_TEXT_REGION 105 761 114 761 50
STRAND 24 766 27
COLOUR_TEXT_REGION 24 766 27 766 51
STRAND 32 766 35
COLOUR_TEXT_REGION 32 766 35 766 51
STRAND 79 766 83
COLOUR_TEXT_REGION 79 766 83 766 51
STRAND 86 766 91
COLOUR_TEXT_REGION 86 766 91 766 51
HELIX 5 766 17
COLOUR_TEXT_REGION 5 766 17 766 50
HELIX 37 766 46
COLOUR_TEXT_REGION 37 766 46 766 50
HELIX 59 766 75
COLOUR_TEXT_REGION 59 766 75 766 50
HELIX 105 766 114
COLOUR_TEXT_REGION 105 766 114 766 50
STRAND 23 767 27
COLOUR_TEXT_REGION 23 767 27 767 51
STRAND 32 767 34
COLOUR_TEXT_REGION 32 767 34 767 51
STRAND 80 767 82
COLOUR_TEXT_REGION 80 767 82 767 51
STRAND 86 767 91
COLOUR_TEXT_REGION 86 767 91 767 51
HELIX 5 767 17
COLOUR_TEXT_REGION 5 767 17 767 50
HELIX 37 767 47
COLOUR_TEXT_REGION 37 767 47 767 50
HELIX 58 767 75
COLOUR_TEXT_REGION 58 767 75 767 50
HELIX 106 767 114
COLOUR_TEXT_REGION 106 767 114 767 50